SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001101669
Gene Symbol: INPP4B
Description: Homo sapiens inositol polyphosphate-4-phosphatase, type II, 105kDa (INPP4B), transcript variant 2, mRNA.
Gene Location: chr4(-):142949181-143767604
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr4:g.142028173G>T COSN15003628 LP6007414-DNA_A02 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3680-5p atgcatggAGTGAGTaaag
0 GACUCACU m7b Disrupted -0.309000 no TS 2.660000
hsa-miR-4798-3p atgcatggaGTGAGTaaag
0 AACUCACG m6b Disrupted -0.166000 no TS 0.090000
hsa-miR-888-5p atgcatggaTTGAGTAaag
0 UACUCAAA m7a (m6a->m7a) no TS -0.063000 -2.280000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.142028233A>G COSN6803669 RK053_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-136-3p atgttccaCGATGATctct
0 CAUCAUCG m7b Created no TS -0.166000 -4.600000
hsa-miR-3190-3p atgTTCCACAatgatctct
2
UGUGGAAG m7a (m7a->m6b) -0.121000 no TS 0.890000
hsa-miR-4289 atgttcCACAATGatctct
2
GCAUUGUG m7b Disrupted -0.242000 no TS 1.250000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.142028255G>A COSN7740319 8016470 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4797-3p aaTACTGAGAcagtttgca
2
UCUCAGUA m8a (m7b->m8a) -0.152000 -0.302000 -0.100000
hsa-miR-548av-3p aatactgagGCAGTTTgca
3
AAAACUGC m7b (m7b->m6b) -0.082000 no TS 3.210000
hsa-miR-548g-3p aatactgagACAGTTTgca
0 AAAACUGU m7b (m6b->m7b) no TS -0.042000 -0.220000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.142028494G>C COSN9216407 AOCS-166-1-2 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-200b-3p ttcattcatCAGTATTtaa
0 UAAUACUG m7b (m6b->m7b) no TS -0.187000 -3.082000
hsa-miR-200c-3p ttcattcatCAGTATTtaa
0 UAAUACUG m7b (m6b->m7b) no TS -0.187000 -3.480000
hsa-miR-429 ttcattcatCAGTATTtaa
0 UAAUACUG m7b (m6b->m7b) no TS -0.178000 -4.300000
hsa-miR-4502 ttcatTCATCAGtatttaa
0 GCUGAUGA m7b Created -0.209000 -0.452000 -0.070000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.142028508T>C COSN1995694 RK067_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4325 cacaAAGTGCAAatttcat
0 UUGCACUU m8a Created no TS -0.336000 -1.950000
hsa-miR-507 cacaaaGTGCAAAtttcat
0 UUUUGCAC m7b Created no TS -0.220000 -1.950000
hsa-miR-557 cacaaaGTGCAAAtttcat
0 GUUUGCAC m7b Created no TS -0.201000 -1.950000
hsa-miR-4325 cacaAAGTGCAAatttcat
0 UUGCACUU m8a Created no TS -0.336 -1.95
hsa-miR-507 cacaaaGTGCAAAtttcat
0 UUUUGCAC m7b Created no TS -0.22 -1.95
hsa-miR-557 cacaaaGTGCAAAtttcat
0 GUUUGCAC m7b Created no TS -0.201 -1.95

Mutation Mutation ID Sample Name Cancer Type
chr4:g.142028528T>G COSN9904737 C0013T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-136-5p ctagctgATGGAGattggt
0 ACUCCAUU m6b Created no TS -0.094000 -1.720000
hsa-miR-216a ctagctgatTGAGATTggt
2
UAAUCUCA m7b (m7b->m6b) -0.114000 no TS No effect
hsa-miR-34a-3p ctaGCTGATTGagattggt
2
CAAUCAGC m8a Disrupted -0.170000 no TS 1.530000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.142028546G>A COSN1995695 RK089_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-376c agctTCTATGTgttgagcc
4
AACAUAGA m7b Disrupted -0.130000 no TS 4.350000
hsa-miR-4789-3p agcttcTATGTGTtgagcc
1
CACACAUA m7b Disrupted -0.116000 -0.056000 3.600000
hsa-miR-376c agctTCTATGTgttgagcc
0 AACAUAGA m7b Disrupted -0.13 no TS 4.35
hsa-miR-4789-3p agcttcTATGTGTtgagcc
0 CACACAUA m7b Disrupted -0.116 -0.056 3.6

Mutation Mutation ID Sample Name Cancer Type
chr4:g.142028596A>T COSN15613943 C0046T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-548c-3p atccATTTTTaaaaatctt
0 CAAAAAUC m6b Created no TS 0.074000 -3.520000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.142028617G>A COSN6803670 RK212_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3942-5p cagcaTATTGCTctgaaag
2
AAGCAAUA m7b Disrupted -0.145000 no TS 2.180000
hsa-miR-4703-5p cagcaTATTGCTctgaaag
2
UAGCAAUA m7b Disrupted -0.127000 no TS -1.610000
hsa-miR-759 cagcatattACTCTGaaag
8
GCAGAGUG m6b Created -0.101000 -0.250000 -1.440000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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