SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001167930
Gene Symbol: IL1RAP
Description: Homo sapiens interleukin 1 receptor accessory protein (IL1RAP), transcript variant 3, mRNA.
Gene Location: chr3(+):190231839-190348073
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Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr3:g.190629553A>G COSN1273800 BN42T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-197-3p ttGTGGTGAAtaaggacaa
4
UUCACCAC m8a (m8a->m7a) -0.575000 -0.376000 0.280000
hsa-miR-3680-5p ttgtgGTGAGTaaggacaa
0 GACUCACU m6b Created -0.141000 -0.292000 -5.100000
hsa-miR-4798-3p ttgtgGTGAGTaaggacaa
0 AACUCACG m6b Created -0.427000 -0.611000 -0.170000
hsa-miR-550b-3p ttgtggtGAGTAAGgacaa
0 UCUUACUC m7b Created no TS -0.178000 -8.590000
hsa-miR-197-3p ttGTGGTGAAtaaggacaa
4
UUCACCAC m8a (m8a->m7a) -0.575000 -0.376000 0.280000
hsa-miR-3680-5p ttgtgGTGAGTaaggacaa
0 GACUCACU m6b Created -0.141000 -0.292000 -5.100000
hsa-miR-4798-3p ttgtgGTGAGTaaggacaa
0 AACUCACG m6b Created -0.427000 -0.611000 -0.170000
hsa-miR-550b-3p ttgtggtGAGTAAGgacaa
0 UCUUACUC m7b Created no TS -0.178000 -8.590000
hsa-miR-197-3p ttGTGGTGAAtaaggacaa
4
UUCACCAC m8a (m8a->m7a) -0.575000 -0.376000 0.280000
hsa-miR-3680-5p ttgtgGTGAGTaaggacaa
0 GACUCACU m6b Created -0.141000 -0.292000 -5.100000
hsa-miR-4798-3p ttgtgGTGAGTaaggacaa
0 AACUCACG m6b Created -0.427000 -0.611000 -0.170000
hsa-miR-550b-3p ttgtggtGAGTAAGgacaa
0 UCUUACUC m7b Created no TS -0.178000 -8.590000
hsa-miR-197-3p ttGTGGTGAAtaaggacaa
8
UUCACCAC m8a (m8a->m7a) -0.575 -0.376 0.28
hsa-miR-3680-5p ttgtgGTGAGTaaggacaa
0 GACUCACU m6b Created -0.141 -0.292 -5.1
hsa-miR-4798-3p ttgtgGTGAGTaaggacaa
0 AACUCACG m6b Created -0.427 -0.611 -0.17
hsa-miR-550b-3p ttgtggtGAGTAAGgacaa
0 UCUUACUC m7b Created no TS -0.178 -8.59


Mutation Mutation ID Sample Name Cancer Type
chr3:g.190629660A>G COSN1273801 HCC94T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.190629975C>G COSN5147662 PD4107a [breast][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-320a aattatatAGCTTTTaata
0 AAAAGCUG m7a Created NA NA 2.510000
hsa-miR-320b aattatatAGCTTTTaata
0 AAAAGCUG m7a Created NA NA 2.510000
hsa-miR-320c aattatatAGCTTTTaata
0 AAAAGCUG m7a Created NA NA 2.410000
hsa-miR-320d aattatatAGCTTTTaata
0 AAAAGCUG m7a Created NA NA 2.210000
hsa-miR-4429 aattatatAGCTTTTaata
0 AAAAGCUG m7a Created NA NA 3.550000
hsa-miR-548m aattataTACCTTTtaata
0 CAAAGGUA m7b Disrupted -0.199000 no TS 8.410000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.190630071T>A COSN8365297 tumor_4163639 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][diffuse_large_B_cell_lymphoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3148 gaatgtttaTTTTCCAaaa
1
UGGAAAAA m7a (m7a->m6b) -0.122000 -0.063000 2.170000
hsa-miR-5093 gaatgtttaATTTCCaaaa
0 AGGAAAUG m6b Created no TS -0.086000 -8.660000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
190629548 rs35274315 - - hsa-miR-197-3p
11
cattGTGGTGAAt
Unknown
N
-0.449
G hsa-miR-500b-3p
hsa-miR-6802-3p
12
12
cattgTGGGTGAat
cattgtGGGTGAAt
Unknown
Unknown
N
N
-0.184
-0.221
190629943 rs1024949 T T hsa-miR-3148
hsa-miR-873-5p
8
7
aaTTTTTCCtgaa
aatttTTCCTGAa
Disrupted
Disrupted
N
N
-0.063
-0.112
C hsa-miR-211-3p
hsa-miR-3127-5p
hsa-miR-4270
hsa-miR-4441
hsa-miR-4668-5p
hsa-miR-5584-5p
hsa-miR-6754-5p
7
5
7
7
8
8
7
aatttTCCCTGAa
aattttCCCTGAA
aatttTCCCTGAa
aatttTCCCTGAa
aaTTTTCCCtgaa
aatTTTCCCTgaa
aatttTCCCTGAa
Created
Created
Created
Created
Created
Created
Created
N
N
N
N
N
N
N
-0.164
-0.172
-0.148
-0.151
-0.156
-0.17
-0.145

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