SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000575 |
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Gene Symbol: | IL1A |
Description: | Homo sapiens interleukin 1, alpha (IL1A), mRNA. |
Gene Location: | chr2(-):113531491-113542971 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.112774081C>A | COSN15427261 | AOCS-139-19-0 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-218-2-3p |
tttgacAACCATGagacca |
0 | CAUGGUUC | m7a | Disrupted | NA | NA |
0.040000 |
hsa-miR-323b-5p |
tttGACAACCatgagacca |
2 |
AGGUUGUC | m7b | (m7b->m6c) | -0.520000 | no TS |
11.260000 |
hsa-miR-4289 |
tttgacaACAATGagacca |
0 | GCAUUGUG | m6b | Created | no TS | -0.054000 | No effect |
hsa-miR-218-2-3p |
tttgacAACCATGagacca |
0 | CAUGGUUC | m7a | Disrupted | NA | NA |
0.040000 |
hsa-miR-323b-5p |
tttGACAACCatgagacca |
2 |
AGGUUGUC | m7b | (m7b->m6c) | -0.520000 | no TS |
11.260000 |
hsa-miR-4289 |
tttgacaACAATGagacca |
0 | GCAUUGUG | m6b | Created | no TS | -0.054000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.112774103A>G | COSN9072658 | AOCS-120-3-6 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-452-3p |
gctaaaattAGATGAactc |
2 |
CUCAUCUG | m6b | Disrupted | -0.079000 | 0.004000 |
0.040000 |
hsa-miR-4735-5p |
gctaAAATTAGatgaactc |
2 |
CCUAAUUU | m7b | Disrupted | -0.115000 | no TS |
1.040000 |
hsa-miR-4775 |
gctAAAATTAgatgaactc |
2 |
UUAAUUUU | m7b | (m7b->m6c) | 0.157000 | 0.117000 |
1.280000 |
hsa-miR-590-3p |
gcTAAAATTAgatgaactc |
2 |
UAAUUUUA | m8a | (m8a->m7b) | 0.089000 | 0.109000 |
0.090000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.112774433A>T | COSN1778408 | RK051_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-340-5p |
gtaTTTATAAatatattta |
0 | UUAUAAAG | m7a | (m7a->m6b) | 0.029000 | no TS |
0.020000 |
hsa-miR-410 |
gtatTTATATatatattta |
6 |
AAUAUAAC | m6b | Created | 0.004000 | 0.001000 | No effect |
hsa-miR-5011-5p |
gtatttaTATATATAttta |
0 | UAUAUAUA | m8a | Created | -0.080000 | -0.436000 |
2.440000 |
hsa-miR-340-5p |
gtaTTTATAAatatattta |
0 | UUAUAAAG | m7a | (m7a->m6b) | 0.029 | no TS |
0.02 |
hsa-miR-410 |
gtatTTATATatatattta |
0 | AAUAUAAC | m6b | Created | 0.004 | 0.001 | No effect |
hsa-miR-5011-5p |
gtatttaTATATATAttta |
0 | UAUAUAUA | m8a | Created | -0.08 | -0.436 |
2.44 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.112774474G>A | COSN9072659 | AOCS-111-1-X | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-2113 |
gcaaaGCACAAAatgttat |
0 | AUUUGUGC | m7b | Created | no TS | -0.243000 |
-0.590000 |
hsa-miR-218-5p |
gcaAAGCACAAaatgttat |
0 | UUGUGCUU | m8a | Created | no TS | -0.246000 |
-0.450000 |
hsa-miR-517a-3p |
gcaaaGCACGAaatgttat |
2 |
AUCGUGCA | m6b | Disrupted | -0.247000 | no TS |
0.570000 |
hsa-miR-517b-3p |
gcaaaGCACGAaatgttat |
2 |
AUCGUGCA | m6b | Disrupted | -0.247000 | no TS |
0.570000 |
hsa-miR-517c-3p |
gcaaaGCACGAaatgttat |
2 |
AUCGUGCA | m6b | Disrupted | -0.243000 | no TS |
0.050000 |
hsa-miR-636 |
gcaAAGCACAaaatgttat |
0 | UGUGCUUG | m7a | (m6b->m7a) | no TS | -0.087000 |
0.240000 |