SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_004513
Gene Symbol: IL16
Description: Homo sapiens interleukin 16 (IL16), transcript variant 3, mRNA.
Gene Location: chr15(+):81589253-81605104
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.81308953C>T COSN14614081 8012352 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4642 cttctagGATGCCAcccag
 2
 AUGGCAUC m7b Created -0.023000 -0.166000 -0.770000
hsa-miR-4642 cttctagGATGCCAcccag
 2
 AUGGCAUC m7b Created -0.023000 -0.166000 -0.770000

Mutation Mutation ID Sample Name Cancer Type
chr15:g.81310385C>T COSN1685775 RK046_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4773 ttcagctcaCTGTTCTatt
 2
 CAGAACAG m7b (m7b->m6c) 0.073000 0.084000 0.020000
hsa-miR-556-5p ttcAGCTCATtgttctatt
 2
 GAUGAGCU m7b (m6b->m7b) -0.110000 -0.063000 No effect
hsa-miR-4773 ttcagctcaCTGTTCTatt
 2
 CAGAACAG m7b (m7b->m6c) 0.073000 0.084000 0.020000
hsa-miR-556-5p ttcAGCTCATtgttctatt
 2
 GAUGAGCU m7b (m6b->m7b) -0.110000 -0.063000 No effect
hsa-miR-4773 ttcagctcaCTGTTCTatt
 0 CAGAACAG m7b (m7b->m6c) 0.073 0.084 0.02
hsa-miR-556-5p ttcAGCTCATtgttctatt
 0 GAUGAGCU m7b (m6b->m7b) -0.11 -0.063 No effect

Mutation Mutation ID Sample Name Cancer Type
chr15:g.81311655G>A COSN8479490 AOCS-095-3-1 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-18a-3p gctcagagAGGGCAGgcat
 0 ACUGCCCU m7b Disrupted -0.602000 -0.532000 4.890000
hsa-miR-3183 gctcAGAGAGGgcaggcat
 2
 GCCUCUCU m7b Disrupted -0.034000 -0.070000 0.940000
hsa-miR-4723-3p gctcAGAGAGGGcaggcat
 2
 CCCUCUCU m8a Disrupted -0.069000 -0.077000 2.480000
hsa-miR-5581-5p gctcagaGAAGGCaggcat
 1
 AGCCUUCC m6b Created -0.198000 -0.204000 -0.020000
hsa-miR-942 gctcAGAGAAGgcaggcat
 0 UCUUCUCU m7b Created 0.043000 0.124000 -0.110000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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