SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001079526 |
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Gene Symbol: | IKZF2 |
Description: | Homo sapiens IKAROS family zinc finger 2 (Helios) (IKZF2), transcript variant 2, mRNA. |
Gene Location: | chr2(-):213864410-214016333 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.212999961G>A | COSN6936995 | 8062308 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-181a-5p |
tgtgtaTGAATGTTgtata |
0 | AACAUUCA | m8a | Created | no TS | -0.115000 |
0.030000 |
|
hsa-miR-181b-5p |
tgtgtaTGAATGTTgtata |
0 | AACAUUCA | m8a | Created | no TS | -0.096000 | No effect | |
hsa-miR-181c-5p |
tgtgtaTGAATGTTgtata |
0 | AACAUUCA | m8a | Created | no TS | -0.115000 | No effect | |
hsa-miR-181d |
tgtgtaTGAATGTTgtata |
0 | AACAUUCA | m8a | Created | no TS | -0.096000 | No effect | |
hsa-miR-4262 |
tgtgtaTGAATGTtgtata |
0 | GACAUUCA | m7b | Created | no TS | -0.133000 | No effect | |
hsa-miR-543 |
tgtgtatGAATGTTgtata |
0 | AAACAUUC | m7b | Created | no TS | -0.118000 |
0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.213000252A>T | COSN6936996 | 8012341 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-5011-5p |
atatatataTATATATAtg |
0 | UAUAUAUA | m8a | (m7a->m8a) | -0.269000 | -0.629000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.213001359A>G | COSN9308016 | AOCS-166-1-2 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.213002896T>C | COSN1823331 | RK025_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.213002906A>G | COSN5496585 | RK155_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4719 |
tgaattataATTTGTGttt |
0 | UCACAAAU | m7b | (m7b->m6b) | 0.178000 | 0.225000 |
-1.250000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.213003337T>C | COSN6167939 | RK136_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4328 |
gaggtgAAACTGaagtttg |
8 |
CCAGUUUU | m6b | Created | 0.306000 | 0.409000 |
-0.030000 |
|
hsa-miR-5096 |
gaGGTGAAACtgaagtttg |
2 |
GUUUCACC | m8a | (m7b->m8a) | 0.033000 | 0.060000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.213004609A>G | COSN8279031 | PCSI_0083_Pa_P_526 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.213004842A>G | COSN15347624 | 0008_CRUK_PC_0008_T2_DNA | [prostate][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4639-3p |
gtagttGAGAGTGcatttg |
6 |
UCACUCUC | m7b | Disrupted | -0.169000 | -0.116000 |
0.010000 |
|
hsa-miR-501-3p |
gtagttgagGGTGCATTtg |
0 | AAUGCACC | m8a | (m7a->m8a) | no TS | -0.056000 |
-0.260000 |
|
hsa-miR-502-3p |
gtagttgagGGTGCATTtg |
0 | AAUGCACC | m8a | (m7a->m8a) | no TS | -0.056000 |
-0.090000 |
|
hsa-miR-4639-3p |
gtagttGAGAGTGcatttg |
6 |
UCACUCUC | m7b | Disrupted | -0.169000 | -0.116000 |
0.010000 |
|
hsa-miR-501-3p |
gtagttgagGGTGCATTtg |
0 | AAUGCACC | m8a | (m7a->m8a) | no TS | -0.056000 |
-0.260000 |
|
hsa-miR-502-3p |
gtagttgagGGTGCATTtg |
0 | AAUGCACC | m8a | (m7a->m8a) | no TS | -0.056000 |
-0.090000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.213005305G>C | COSN6167940 | RK186_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3675-3p |
caaaacAGAGATatataga |
1 |
CAUCUCUA | m6b | Disrupted | 0.007000 | -0.024000 | No effect | |
hsa-miR-654-3p |
caaaaCAGACATAtataga |
1 |
UAUGUCUG | m8a | Created | 0.011000 | -0.044000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.213005513G>A | COSN6167941 | RK308_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3170 |
gcaagtttgACCCCAatac |
0 | CUGGGGUU | m6b | Created | no TS | -0.051000 | No effect | |
hsa-miR-3926 |
gcaagTTTGGCCccaatac |
0 | UGGCCAAA | m7b | Disrupted | -0.181000 | -0.221000 |
0.010000 |
|
hsa-miR-4260 |
gcaagtttgGCCCCAAtac |
0 | CUUGGGGC | m7b | (m7b->m6b) | -0.080000 | -0.058000 |
0.020000 |
|
hsa-miR-5572 |
gcaagtttgACCCCAAtac |
0 | GUUGGGGU | m7b | (m6b->m7b) | -0.061000 | -0.075000 |
-0.160000 |
|
hsa-miR-615-5p |
gcaagtttGACCCCaatac |
12 |
GGGGGUCC | m6b | Created | -0.315000 | -0.417000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.213005657C>A | COSN9873408 | C0020T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-224-3p |
tctgataACCATTTgtgaa |
2 |
AAAAUGGU | m7b | Disrupted | 0.094000 | 0.045000 |
0.100000 |
|
hsa-miR-522-3p |
tctgataACCATTTgtgaa |
2 |
AAAAUGGU | m7b | Disrupted | 0.085000 | 0.036000 |
0.050000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.213005925A>G | COSN1823333 | RK141_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-33a-3p |
ttccaAAACATTtaattgt |
0 | CAAUGUUU | m7b | Disrupted | 0.575000 | 0.491000 | No effect | |
hsa-miR-4307 |
ttccAAAACATTtaattgt |
3 |
AAUGUUUU | m8a | Disrupted | 0.676000 | 0.508000 | No effect | |
hsa-miR-33a-3p |
ttccaAAACATTtaattgt |
0 | CAAUGUUU | m7b | Disrupted | 0.575 | 0.491 |
-0.14 |
|
hsa-miR-4307 |
ttccAAAACATTtaattgt |
0 | AAUGUUUU | m8a | Disrupted | 0.676 | 0.508 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.213006735C>T | COSN6556712 | ICGC_MB88 | [central_nervous_system][brain][primitive_neuroectodermal_tumour-medulloblastoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-20b-3p |
tttaaACTACAGgtagtta |
15 |
ACUGUAGU | m7b | Disrupted | -0.137000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.213006968G>T | COSN191203 | PD3890a | [breast][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3973 |
tctgggtagTACTTTGgtg |
0 | ACAAAGUA | m7b | (m6b->m7b) | -0.064000 | -0.091000 | No effect | |
hsa-miR-548av-5p |
tctgggtaGTACTTTggtg |
2 |
AAAAGUAC | m7b | Created | 0.218000 | 0.152000 | No effect | |
hsa-miR-548k |
tctgggtaGTACTTTggtg |
2 |
AAAAGUAC | m7b | Created | 0.218000 | 0.152000 | No effect | |
hsa-miR-3973 |
tctgggtagTACTTTGgtg |
0 | ACAAAGUA | m7b | (m6b->m7b) | -0.064 | -0.091 | No effect | |
hsa-miR-548av-5p |
tctgggtaGTACTTTggtg |
0 | AAAAGUAC | m7b | Created | 0.218 | 0.152 | No effect | |
hsa-miR-548k |
tctgggtaGTACTTTggtg |
0 | AAAAGUAC | m7b | Created | 0.218 | 0.152 |
-6.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.213007258A>G | COSN8608557 | 88_T | [prostate][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
213000250 | rs202065217 | - | - |
hsa-miR-190a-3p hsa-miR-5011-5p |
9 9 |
atataaATATATAtg atataaaTATATATg |
Unknown Unknown |
N N |
0.01 0.01 |
AA | |||||||||
213000251 | rs71761029 | - | - |
hsa-miR-190a-3p hsa-miR-5011-5p hsa-miR-6083 |
9 9 3 |
tatataaATATATAt tatataaATATATAt tATATAAAtatatat |
Unknown Unknown Unknown |
N N N |
0.01 0.01 0.002 |
AA | |||||||||
213000254 | rs200528678 | T | T |
hsa-miR-190a-3p hsa-miR-5011-5p hsa-miR-6083 |
21 8 8 |
tATATATAAatat TATATATAaatat tatATATAAAtat |
Disrupted Disrupted Disrupted |
N N N |
-0.118 -0.087 No Change |
213000254 | rs63659661 | - | - |
hsa-miR-190a-3p hsa-miR-5011-5p hsa-miR-6083 |
21 8 8 |
atatATATATAAatatata ataTATATATAaatatata atatatATATAAAtatata |
Unknown Unknown Unknown |
N N N |
-0.093 -0.079 0.02 |
ATAT |
hsa-miR-656-3p hsa-miR-889-3p |
8 8 |
atatatATAATATtaaatatata atatatataATATTAAatatata |
Unknown Unknown |
N N |
-0.07 0.003 |
|||
213000255 | rs71708099 | - | - |
hsa-miR-190a-3p hsa-miR-5011-5p hsa-miR-6083 |
21 5 21 |
tatatATATATAAatatat taTATATATAtaaatatat tatatatATATAAAtatat |
Unknown Unknown Unknown |
N N N |
-0.245 -0.074 0.02 |
TATA |
hsa-miR-1277-5p hsa-miR-369-3p hsa-miR-374a-5p hsa-miR-374b-5p hsa-miR-5692b hsa-miR-5692c |
8 21 21 21 21 21 |
tatATATATTAtaataaatatat tatataTATTATAataaatatat tatataTATTATAAtaaatatat tatataTATTATAAtaaatatat tatatATATTATAataaatatat tatatATATTATAataaatatat |
Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N |
-0.164 -0.004 -0.117 -0.096 -0.106 -0.106 |
|||
213000256 | rs71745735 | - | - |
hsa-miR-190a-3p hsa-miR-5011-5p hsa-miR-6083 |
21 5 5 |
atatatATATATAAatata ataTATATATAtaaatata atatatatATATAAAtata |
Unknown Unknown Unknown |
N N N |
-0.226 -0.174 0.02 |
ATAT |
hsa-miR-5692b hsa-miR-5692c hsa-miR-656-3p |
5 5 21 |
atatatataATATTATAaatata atatatataATATTATAaatata atatatATAATATtataaatata |
Unknown Unknown Unknown |
N N N |
-0.104 -0.104 -0.078 |
|||
213000272 | rs9679183 | A | |||||||
T |
hsa-miR-190a-3p hsa-miR-5011-5p |
13 13 |
aaaagATATATAt aaaagaTATATAT |
Created Created |
N N |
-0.044 -0.08 |
|||
213001087 | rs11901655 | A | |||||||
G |
hsa-miR-140-3p hsa-miR-197-3p hsa-miR-4328 |
15 15 12 |
aaaaCTGTGGTga aaaactGTGGTGA AAAACTGtggtga |
Created Created Created |
N N N |
-0.103 -0.093 0.065 |
|||
213006170 | rs7593379 | A | G |
hsa-miR-1972 hsa-miR-3926 hsa-miR-4650-5p |
0 |
aattTGGCCTGAa aaTTTGGCCtgaa aatttGGCCTGAa |
Created Created Created |
N N N |
-0.229 -0.098 -0.102 |
213007026 | rs186763736 | T | T |
hsa-miR-3688-5p hsa-miR-4470 |
12 13 |
ctgatTTGCCACt ctgaTTTGCCAct |
Disrupted Disrupted |
N N |
-0.237 -0.087 |
G |
hsa-miR-3677-5p hsa-miR-3926 hsa-miR-548s |
12 13 13 |
ctgattGGCCACT ctgaTTGGCCAct ctgaTTGGCCAct |
Created Created Created |
N N N |
-0.299 -0.137 -0.201 |