SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001220776 |
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Gene Symbol: | IKZF1 |
Description: | Homo sapiens IKAROS family zinc finger 1 (Ikaros) (IKZF1), transcript variant 2, mRNA. |
Gene Location: | chr7(+):50344377-50472798 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50400883C>T | COSN9992105 | AOCS-147-1-1 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4274 |
tccccaGACTGCTGgctga |
2 |
CAGCAGUC | m8a | Created | -0.092000 | -0.213000 | No effect | |
hsa-miR-4530 |
tccccagaCTGCTGGctga |
3 |
CCCAGCAG | m7b | Created | -0.089000 | -0.288000 |
-2.070000 |
|
hsa-miR-622 |
tcccCAGACTGctggctga |
0 | ACAGUCUG | m7b | Created | -0.031000 | -0.101000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50400934C>T | COSN8026085 | 8057484 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-382-3p |
ttctccaAATGATTagtct |
0 | AAUCAUUC | m7a | Created | NA | NA |
-0.010000 |
|
hsa-miR-5707 |
ttctcCAAACGattagtct |
0 | ACGUUUGA | m6b | Disrupted | -0.235000 | -0.083000 |
0.010000 |
|
hsa-miR-579 |
ttctcCAAATGAttagtct |
1 |
UUCAUUUG | m7b | Created | 0.519000 | 0.474000 |
-1.650000 |
|
hsa-miR-644b-3p |
ttctcCAAATGAttagtct |
1 |
UUCAUUUG | m7b | Created | 0.467000 | 0.422000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50401034G>A | COSN8802326 | SS6003317 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50401299C>T | COSN9992106 | AOCS-112-1-2 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50401399A>G | COSN6884820 | RK205_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4279 |
tagGAGGAGActgtcttcc |
2 |
CUCUCCUC | m7b | (m7b->m6b) | 0.103000 | 0.100000 |
0.010000 |
|
hsa-miR-5193 |
tagGAGGAGGctgtcttcc |
2 |
UCCUCCUC | m7b | (m6b->m7b) | -0.055000 | -0.074000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50401551C>A | COSN15182291 | LP6005334-DNA_C02 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1 |
gcaACATTCCtcagaaacc |
2 |
UGGAAUGU | m7b | (m7b->m6b) | -0.051000 | no TS |
3.080000 |
|
hsa-miR-206 |
gcaACATTCCtcagaaacc |
2 |
UGGAAUGU | m7b | (m7b->m6b) | -0.051000 | no TS |
0.020000 |
|
hsa-miR-3915 |
gcaacaTTCCTCAgaaacc |
1 |
UUGAGGAA | m7b | Disrupted | -0.277000 | -0.206000 |
-0.060000 |
|
hsa-miR-3928 |
gcaacaTTCCTCagaaacc |
2 |
GGAGGAAC | m6b | Disrupted | -0.021000 | -0.006000 |
0.260000 |
|
hsa-miR-4303 |
gcaacattcCTCAGAAacc |
8 |
UUCUGAGC | m7a | (m7a->m6b) | -0.069000 | -0.034000 |
0.540000 |
|
hsa-miR-4502 |
gcaacatTCATCAGaaacc |
0 | GCUGAUGA | m7b | Created | -0.029000 | -0.198000 |
-3.230000 |
|
hsa-miR-4649-3p |
gcaacattCCTCAGAaacc |
1 |
UCUGAGGC | m7a | Disrupted | -0.185000 | -0.126000 |
0.080000 |
|
hsa-miR-4762-3p |
gcaacattcATCAGAAacc |
0 | CUUCUGAU | m7b | (m6c->m7b) | 0.090000 | 0.064000 |
-1.540000 |
|
hsa-miR-613 |
gcaACATTCCTcagaaacc |
2 |
AGGAAUGU | m8a | Disrupted | -0.070000 | no TS |
0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50401813C>A | COSN9992107 | AOCS-091-3-0 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1285-3p |
gaaGCCCAGAatctctgtt |
0 | UCUGGGCA | m7a | (m6a->m7a) | -0.064000 | -0.142000 |
-0.010000 |
|
hsa-miR-4314 |
gaagCCCAGAatctctgtt |
3 |
CUCUGGGA | m6b | Created | -0.091000 | -0.146000 | No effect | |
hsa-miR-4486 |
gaaGCCCAGCatctctgtt |
0 | GCUGGGCG | m7a | (m7a->m6a) | no TS | -0.099000 | No effect | |
hsa-miR-4708-5p |
gaagcccaGCATCTCTgtt |
5 |
AGAGAUGC | m8a | Disrupted | -0.055000 | no TS |
4.040000 |
|
hsa-miR-5189 |
gaaGCCCAGAatctctgtt |
0 | UCUGGGCA | m7a | (m6a->m7a) | -0.064000 | -0.142000 | No effect | |
hsa-miR-5589-5p |
gaagCCCAGCatctctgtt |
1 |
GGCUGGGU | m6b | Disrupted | -0.176000 | -0.101000 | No effect | |
hsa-miR-612 |
gaaGCCCAGCatctctgtt |
0 | GCUGGGCA | m7a | (m7a->m6a) | -0.064000 | -0.145000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50402494C>G | COSN4934126 | PD4115a | [breast][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4433-3p |
gaaatcACTCCTGggggag |
2 |
ACAGGAGU | m7b | Disrupted | 0.106000 | no TS |
0.070000 |
|
hsa-miR-4519 |
gaaatCACTGCTGggggag |
2 |
CAGCAGUG | m8a | Created | -0.081000 | -0.048000 |
-0.010000 |
|
hsa-miR-4530 |
gaaatcaCTGCTGGGggag |
3 |
CCCAGCAG | m8a | Created | -0.089000 | -0.058000 |
-0.010000 |
|
hsa-miR-4765 |
gaaATCACTCctgggggag |
3 |
UGAGUGAU | m7b | (m7b->m6b) | 0.053000 | no TS | No effect | |
hsa-miR-665 |
gaaatcaCTCCTGGgggag |
0 | ACCAGGAG | m7b | Disrupted | -0.429000 | -0.449000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50403081T>A | COSN8026086 | 8014964 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-186-5p |
tgcaggaATTCTTTtctaa |
5 |
CAAAGAAU | m7b | Disrupted | 0.272000 | 0.134000 |
0.040000 |
|
hsa-miR-548l |
tgcaggaATACTTTTctaa |
13 |
AAAAGUAU | m8a | Created | 0.070000 | 0.209000 |
-0.160000 |
|
hsa-miR-548n |
tgcaggaaTACTTTTctaa |
0 | CAAAAGUA | m7b | Created | no TS | 0.140000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50403424C>T | COSN9944362 | C0038T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3529-3p |
atgcactcTTGTTGTgttt |
0 | AACAACAA | m7b | Created | 0.171000 | 0.298000 | No effect | |
hsa-miR-4693-3p |
atgCACTCTCgttgtgttt |
3 |
UGAGAGUG | m7b | (m7b->m6b) | 0.021000 | 0.005000 | No effect | |
hsa-miR-5003-5p |
atgcactctTGTTGTGttt |
8 |
UCACAACA | m7b | (m6c->m7b) | -0.356000 | -0.388000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50403844A>G | COSN8303297 | PCSI_0083_Pa_P_526 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-128 |
tttgactgCACTGTGAgtt |
17 |
UCACAGUG | m8a | Disrupted | -0.146000 | -0.111000 | No effect | |
hsa-miR-143-5p |
tttgACTGCACtgtgagtt |
2 |
GGUGCAGU | m7b | Disrupted | -0.047000 | no TS | No effect | |
hsa-miR-148a-3p |
tttgacTGCACTGtgagtt |
2 |
UCAGUGCA | m7b | Disrupted | -0.060000 | -0.003000 | No effect | |
hsa-miR-148b-3p |
tttgacTGCACTGtgagtt |
2 |
UCAGUGCA | m7b | Disrupted | -0.060000 | -0.003000 | No effect | |
hsa-miR-152 |
tttgacTGCACTGtgagtt |
2 |
UCAGUGCA | m7b | Disrupted | -0.060000 | -0.003000 | No effect | |
hsa-miR-27a-3p |
tttgactgcACTGTGAgtt |
0 | UUCACAGU | m7b | (m7b->m6c) | -0.071000 | -0.082000 | No effect | |
hsa-miR-27b-3p |
tttgactgcACTGTGAgtt |
0 | UUCACAGU | m7b | (m7b->m6c) | -0.071000 | -0.082000 | No effect | |
hsa-miR-3681-3p |
tttgactgCACTGTGagtt |
17 |
ACACAGUG | m7b | Disrupted | -0.167000 | -0.143000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50404198G>T | COSN8516717 | 3584_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50404249G>T | COSN8516718 | J90_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50404470G>A | COSN5226138 | SS6003323 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-122-3p |
cacacTGGCGTaagagaag |
0 | AACGCCAU | m6b | Disrupted | -0.262000 | -0.086000 |
0.830000 |
|
hsa-miR-4633-5p |
cacactGGCATAagagaag |
0 | AUAUGCCU | m6b | Created | no TS | -0.060000 | No effect | |
hsa-miR-491-3p |
cacactgGCATAAGagaag |
0 | CUUAUGCA | m7a | Created | NA | NA |
-0.080000 |
|
hsa-miR-122-3p |
cacacTGGCGTaagagaag |
0 | AACGCCAU | m6b | Disrupted | -0.262000 | -0.086000 |
0.830000 |
|
hsa-miR-4633-5p |
cacactGGCATAagagaag |
0 | AUAUGCCU | m6b | Created | no TS | -0.060000 | No effect | |
hsa-miR-491-3p |
cacactgGCATAAGagaag |
0 | CUUAUGCA | m7a | Created | NA | NA |
-0.080000 |
|
hsa-miR-122-3p |
cacacTGGCGTaagagaag |
0 | AACGCCAU | m6b | Disrupted | -0.262000 | -0.086000 |
0.830000 |
|
hsa-miR-4633-5p |
cacactGGCATAagagaag |
0 | AUAUGCCU | m6b | Created | no TS | -0.060000 | No effect | |
hsa-miR-491-3p |
cacactgGCATAAGagaag |
0 | CUUAUGCA | m7a | Created | NA | NA |
-0.080000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50404594T>C | COSN8802327 | SS6003149 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1197 |
tgtgGTGTCCTgatgtggc |
2 |
UAGGACAC | m7b | Created | -0.089000 | -0.178000 | No effect | |
hsa-miR-4436a |
tgtggTGTCCTGatgtggc |
0 | GCAGGACA | m7b | Created | no TS | -0.192000 | No effect | |
hsa-miR-5000-3p |
tgtggTGTCCTGAtgtggc |
0 | UCAGGACA | m8a | Created | no TS | -0.192000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.50404837C>T | COSN8303298 | ASHPC_0009_Pa_P | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3120-3p |
gccttttgaTGCTGTaaat |
2 |
CACAGCAA | m6b | Created | -0.140000 | -0.263000 |
-0.030000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.50404961A>T | COSN9992108 | AOCS-138-3-X | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-let-7a-3p |
ttggatgtTTGTATAGaat |
0 | CUAUACAA | m8a | Created | no TS | -0.102000 |
-0.810000 |
hsa-let-7b-3p |
ttggatgtTTGTATAGaat |
0 | CUAUACAA | m8a | Created | no TS | -0.102000 |
-2.090000 |
hsa-let-7f-1-3p |
ttggatgtTTGTATAGaat |
0 | CUAUACAA | m8a | Created | no TS | -0.111000 |
-3.700000 |
hsa-let-7f-2-3p |
ttggatgttTGTATAGaat |
0 | CUAUACAG | m7a | (m6b->m7a) | NA | NA |
-1.100000 |
hsa-miR-1284 |
ttggatgttTGTATAGAat |
0 | UCUAUACA | m8a | (m7b->m8a) | -0.126000 | -0.347000 |
-3.710000 |
hsa-miR-4666a-3p |
ttggatgtTTGTATagaat |
12 |
CAUACAAU | m6b | Created | 0.054000 | 0.023000 | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
50400857 | rs115476644 | C | C |
hsa-miR-4274 hsa-miR-4519 |
2 2 |
gaACTGCTAcctt gaACTGCTAcctt |
Disrupted Disrupted |
N N |
-0.092 -0.081 |
50401392 | rs115538632 | G | G |
hsa-miR-5193 hsa-miR-660-3p hsa-miR-6761-3p |
2 2 2 |
cccgtAGGAGGAg cccgtAGGAGGAg ccCGTAGGAggag |
Disrupted Disrupted Disrupted |
N N N |
-0.01 -0.004 -0.111 |
A |
hsa-miR-6881-3p hsa-miR-877-3p |
2 2 |
cccgtAAGAGGAg cccgtAAGAGGAg |
Created Created |
N N |
0.031 0.042 |
|||
50401540 | rs190821783 | C | C |
hsa-miR-5707 |
2 |
cTCAAACGgcaac |
Disrupted |
N |
-0.083 |
T |
hsa-miR-4659a-5p hsa-miR-4659b-5p hsa-miR-4776-3p hsa-miR-5590-5p hsa-miR-6501-5p |
1 1 1 1 1 |
ctcaaATGGCAAc ctcaaATGGCAAc ctcaaATGGCAAc ctcaaATGGCAAc ctcaaaTGGCAAC |
Created Created Created Created Created |
N N N N N |
-0.066 -0.066 -0.081 -0.07 -0.154 |
|||
50401551 | rs75552282 | C | C |
hsa-miR-1 hsa-miR-206 hsa-miR-3915 hsa-miR-3928-3p hsa-miR-4303 hsa-miR-4649-3p hsa-miR-613 hsa-miR-7162-3p |
2 2 4 4 8 7 2 7 |
ACATTCCtcagaa ACATTCCtcagaa acaTTCCTCAgaa acaTTCCTCAgaa acattcCTCAGAA acattCCTCAGAa ACATTCCtcagaa acattCCTCAGAa |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N |
-0.051 -0.051 -0.071 -0.015 -0.035 -0.059 -0.07 -0.069 |
T |
hsa-miR-3185 |
4 |
acaTTCTTCAgaa |
Created |
N |
0.046 |
|||
50402081 | rs75168275 | C | C |
hsa-miR-148a-3p hsa-miR-148b-3p hsa-miR-152-3p hsa-miR-33b-3p hsa-miR-4276 hsa-miR-515-3p hsa-miR-519e-3p |
2 2 2 2 2 2 2 |
gagGCACTGAagc gagGCACTGAagc gagGCACTGAagc gAGGCACTgaagc gaggCACTGAAgc gAGGCACTgaagc gAGGCACTgaagc |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N |
0.023 0.023 0.023 0.028 0.075 0.028 0.018 |
A |
hsa-miR-3152-5p hsa-miR-4317 hsa-miR-6836-3p |
2 2 2 |
GAGGCAAtgaagc gaGGCAATGAagc GAGGCAAtgaagc |
Created Created Created |
N N N |
0.03 -0.013 -0.071 |
|||
50402170 | rs199553079 | - | CT |
hsa-miR-4693-3p |
3 |
gtcattACTCTCAac |
Unknown |
N |
0.005 |
- |
hsa-miR-6869-5p |
3 |
gtcatTACTCAAc |
Unknown |
N |
0.06 |
|||
50403082 | rs75358704 | C | C |
hsa-miR-186-5p |
5 |
ggaATTCTTTtct |
Disrupted |
N |
0.138 |
A |
hsa-miR-5692a |
5 |
ggaATTATTTtct |
Created |
N |
0.22 |
|||
50403357 | rs200572756 | A | A |
hsa-miR-154-3p hsa-miR-3529-3p hsa-miR-485-3p hsa-miR-487a-3p hsa-miR-539-3p |
3 4 3 3 3 |
tgttGTATGATgg TGTTGTAtgatgg tgtTGTATGAtgg tgttGTATGATgg tgtTGTATGAtgg |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
0.083 0.066 0.09 0.073 0.072 |
G |
hsa-miR-377-3p hsa-miR-5003-5p hsa-miR-6884-3p |
3 4 4 |
tgtTGTGTGAtgg TGTTGTGtgatgg tgttgtGTGATGG |
Created Created Created |
N N N |
0.032 0.085 0.035 |
|||
50403364 | rs75045598 | C | C |
hsa-miR-122-3p hsa-miR-4798-3p |
12 21 |
tgATGGCGTgagt tgatggCGTGAGT |
Disrupted Disrupted |
N N |
-0.086 -0.033 |
T |
hsa-miR-1228-3p hsa-miR-342-3p |
21 21 |
tgatGGTGTGAgt tgatgGTGTGAGt |
Created Created |
N N |
0.012 0.019 |
|||
50403425 | rs141366009 | G | |||||||
A |
hsa-miR-4693-3p hsa-miR-4712-3p |
2 1 |
ACTCTCAttgtgt aCTCTCATtgtgt |
Created Created |
N N |
-0.037 0.029 |
|||
50404837 | rs144763889 | C | |||||||
T |
hsa-miR-3120-3p |
2 |
ttttgaTGCTGTA |
Created |
N |
-0.123 |