SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_016142
Gene Symbol: HSD17B12
Description: Homo sapiens hydroxysteroid (17-beta) dehydrogenase 12 (HSD17B12), mRNA.
Gene Location: chr11(+):43702142-43878169
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr11:g.43855410->G cosmic_v64_1870279 NA [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4640-3p cttttAGGGGGTttctgaca
0 CACCCCCU m7b Created no TS -0.352000 -11.540000
hsa-miR-5195-5p ctttTAGGGGTTtctgaca
2
AACCCCUA m8a Disrupted -0.379000 no TS 0.770000

Mutation Mutation ID Sample Name Cancer Type
chr11:g.43856591A>G COSN1534902 RK079_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4272 tttaaGTTGAATaaatata
2
CAUUCAAC m7b Disrupted -0.352000 no TS 1.380000
hsa-miR-4272 tttaaGTTGAATaaatata
2
CAUUCAAC m7b Disrupted -0.352 no TS 1.38

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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