SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_006898
Gene Symbol: HOXD3
Description: Homo sapiens homeobox D3 (HOXD3), mRNA.
Gene Location: chr2(+):177028804-177037826
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr2:g.176172434C>T COSN4799369 tumor_4102009 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1538 cgcaggcgaCCGGGCCtcc
0 CGGCCCGG m7b (m7b->m6c) -0.304000 no TS 0.620000
hsa-miR-4745-3p cgcaggcgaCCGGGCCtcc
0 UGGCCCGG m7b (m7b->m6c) -0.266000 no TS 0.840000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.176172661A>C COSN8556389 tumor_4163639 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][diffuse_large_B_cell_lymphoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3646 agagaccTTCATTTatatt
0 AAAAUGAA m7b Created no TS 0.066000 -5.420000
hsa-miR-493-3p agaGACCTTCAtttatatt
0 UGAAGGUC m8a Created no TS -0.354000 -1.910000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.176172672T>C COSN7148053 8036161 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3179 tttatattCCCCTTCctgt
0 AGAAGGGG m7b Created -0.076000 -0.329000 -4.370000
hsa-miR-3202 tttatattcCCCTTCCtgt
0 UGGAAGGG m7b (m6c->m7b) -0.049000 -0.215000 -3.370000
hsa-miR-4428 tttatatTCTCCTTcctgt
2
CAAGGAGA m7b Disrupted -0.203000 -0.058000 6.070000
hsa-miR-4533 tttatattcTCCTTCCtgt
13
UGGAAGGA m7b (m7b->m6c) -0.273000 -0.171000 3.240000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.176172876G>A COSN9117867 AOCS-160-1-6 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-708-3p gaaCTAGTTGagagagtag
0 CAACUAGA m7a (m7a->m6a) no TS -0.066000 -0.010000

Mutation Mutation ID Sample Name Cancer Type
chr2:g.176173032A>G COSN15062071 LP6005500-DNA_B01 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1537 cctcaccACGGTTTattga
0 AAAACCGU m7b Created no TS -0.415000 0.710000
hsa-miR-4318 cctcaCCACAGTttattga
0 CACUGUGG m7b Disrupted -0.503000 -0.232000 0.980000
hsa-miR-451a cctcaccACGGTTTattga
0 AAACCGUU m7a Created NA NA No effect
hsa-miR-548av-3p cctcaccaCAGTTTattga
0 AAAACUGC m6b Disrupted -0.059000 no TS No effect
hsa-miR-548g-3p cctcaccACAGTTTattga
0 AAAACUGU m7b Disrupted -0.213000 no TS 3.640000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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