SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_006898 |
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Gene Symbol: | HOXD3 |
Description: | Homo sapiens homeobox D3 (HOXD3), mRNA. |
Gene Location: | chr2(+):177028804-177037826 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.176172434C>T | COSN4799369 | tumor_4102009 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1538 |
cgcaggcgaCCGGGCCtcc |
0 | CGGCCCGG | m7b | (m7b->m6c) | -0.304000 | no TS |
0.620000 |
hsa-miR-4745-3p |
cgcaggcgaCCGGGCCtcc |
0 | UGGCCCGG | m7b | (m7b->m6c) | -0.266000 | no TS |
0.840000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.176172661A>C | COSN8556389 | tumor_4163639 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][diffuse_large_B_cell_lymphoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3646 |
agagaccTTCATTTatatt |
0 | AAAAUGAA | m7b | Created | no TS | 0.066000 |
-5.420000 |
hsa-miR-493-3p |
agaGACCTTCAtttatatt |
0 | UGAAGGUC | m8a | Created | no TS | -0.354000 |
-1.910000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.176172672T>C | COSN7148053 | 8036161 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3179 |
tttatattCCCCTTCctgt |
0 | AGAAGGGG | m7b | Created | -0.076000 | -0.329000 |
-4.370000 |
hsa-miR-3202 |
tttatattcCCCTTCCtgt |
0 | UGGAAGGG | m7b | (m6c->m7b) | -0.049000 | -0.215000 |
-3.370000 |
hsa-miR-4428 |
tttatatTCTCCTTcctgt |
2 |
CAAGGAGA | m7b | Disrupted | -0.203000 | -0.058000 |
6.070000 |
hsa-miR-4533 |
tttatattcTCCTTCCtgt |
13 |
UGGAAGGA | m7b | (m7b->m6c) | -0.273000 | -0.171000 |
3.240000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.176172876G>A | COSN9117867 | AOCS-160-1-6 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-708-3p |
gaaCTAGTTGagagagtag |
0 | CAACUAGA | m7a | (m7a->m6a) | no TS | -0.066000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.176173032A>G | COSN15062071 | LP6005500-DNA_B01 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1537 |
cctcaccACGGTTTattga |
0 | AAAACCGU | m7b | Created | no TS | -0.415000 |
0.710000 |
hsa-miR-4318 |
cctcaCCACAGTttattga |
0 | CACUGUGG | m7b | Disrupted | -0.503000 | -0.232000 |
0.980000 |
hsa-miR-451a |
cctcaccACGGTTTattga |
0 | AAACCGUU | m7a | Created | NA | NA | No effect |
hsa-miR-548av-3p |
cctcaccaCAGTTTattga |
0 | AAAACUGC | m6b | Disrupted | -0.059000 | no TS | No effect |
hsa-miR-548g-3p |
cctcaccACAGTTTattga |
0 | AAAACUGU | m7b | Disrupted | -0.213000 | no TS |
3.640000 |