SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_024501 |
---|---|
Gene Symbol: | HOXD1 |
Description: | Homo sapiens homeobox D1 (HOXD1), mRNA. |
Gene Location: | chr2(+):177053306-177055635 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.176190165A>G | COSN14984462 | LP6005690-DNA_C01 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4328 |
ggccgaAAAACTGtggcct |
2 |
CCAGUUUU | m7b | Disrupted | 0.003000 | no TS |
0.110000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.176190315C>A | COSN9867282 | C0048T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3126-3p |
ctatatgtCCAGATattaa |
0 | CAUCUGGC | m6b | Disrupted | -0.159000 | no TS |
0.470000 |
hsa-miR-378a-3p |
ctatatGTCCAGatattaa |
2 |
ACUGGACU | m6b | Disrupted | -0.206000 | no TS |
2.710000 |
hsa-miR-378b |
ctatatGTCCAGatattaa |
2 |
ACUGGACU | m6b | Disrupted | -0.193000 | no TS |
2.080000 |
hsa-miR-378c |
ctatatGTCCAGatattaa |
2 |
ACUGGACU | m6b | Disrupted | -0.206000 | no TS |
2.420000 |
hsa-miR-378d |
ctatatGTCCAGatattaa |
2 |
ACUGGACU | m6b | Disrupted | -0.206000 | no TS |
2.910000 |
hsa-miR-378e |
ctatatGTCCAGatattaa |
2 |
ACUGGACU | m6b | Disrupted | -0.206000 | no TS |
4.990000 |
hsa-miR-378f |
ctatatGTCCAGatattaa |
2 |
ACUGGACU | m6b | Disrupted | -0.193000 | no TS |
2.420000 |
hsa-miR-378h |
ctatatGTCCAGatattaa |
2 |
ACUGGACU | m6b | Disrupted | -0.203000 | no TS |
2.830000 |
hsa-miR-378i |
ctatatGTCCAGatattaa |
2 |
ACUGGACU | m6b | Disrupted | -0.206000 | no TS |
4.240000 |
hsa-miR-422a |
ctatatGTCCAGatattaa |
2 |
ACUGGACU | m6b | Disrupted | -0.203000 | no TS |
4.510000 |
hsa-miR-4638-3p |
ctataTGTCCAGatattaa |
2 |
CCUGGACA | m7b | Disrupted | -0.455000 | no TS |
2.970000 |
hsa-miR-489 |
ctatATGTCAagatattaa |
0 | GUGACAUC | m6b | Created | no TS | -0.098000 | No effect |
hsa-miR-516b-5p |
ctatatgTCCAGATattaa |
0 | AUCUGGAG | m7a | Disrupted | NA | NA |
1.320000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.176190464A>G | COSN15514032 | AOCS-170-3-5 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3129-3p |
cagaccATTAGTTgctgag |
11 |
AAACUAAU | m7b | Disrupted | 0.006000 | -0.013000 |
0.660000 |
hsa-miR-5583-5p |
cagaccATTAGTTgctgag |
11 |
AAACUAAU | m7b | Disrupted | 0.012000 | -0.016000 | No effect |
hsa-miR-3129-3p |
cagaccATTAGTTgctgag |
11 |
AAACUAAU | m7b | Disrupted | 0.006000 | -0.013000 |
0.660000 |
hsa-miR-5583-5p |
cagaccATTAGTTgctgag |
11 |
AAACUAAU | m7b | Disrupted | 0.012000 | -0.016000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.176190591C>T | COSN7148064 | 8033414 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4428 |
agttagggTCTCCTTGatg |
5 |
CAAGGAGA | m8a | Disrupted | -0.102000 | no TS |
2.290000 |
hsa-miR-4496 |
agttaggGTTTCCTtgatg |
0 | GAGGAAAC | m7b | Created | no TS | -0.085000 |
-9.000000 |
hsa-miR-652-5p |
agtTAGGGTTtccttgatg |
0 | CAACCCUA | m7b | (m6b->m7b) | no TS | -0.182000 |
-6.510000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.176190728C>T | HOXD1_E2_UTR_3 | SJHYPO052_R | Hypodiploid_ALL | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-20b-3p |
gaacaaatCTACAGaatgg |
0 | ACUGUAGU | m6b | Created | no TS | -0.132 |
-0.05 |
hsa-miR-3137 |
gaacaaatCTACAGAatgg |
0 | UCUGUAGC | m7a | Created | no TS | -0.138 | No effect |
hsa-miR-3167 |
gaacAAATCCacagaatgg |
8 |
AGGAUUUC | m6b | Disrupted | -0.069 | no TS |
2.23 |
hsa-miR-3686 |
gaacaaatcTACAGAatgg |
0 | AUCUGUAA | m6b | Created | no TS | -0.097 |
-0.04 |
hsa-miR-3691-5p |
gaacaaATCCACagaatgg |
8 |
AGUGGAUG | m6b | Disrupted | -0.14 | no TS |
6.93 |
hsa-miR-376a-5p |
gaacaAATCTACagaatgg |
0 | GUAGAUUC | m7a | Created | NA | NA | No effect |
hsa-miR-4752 |
gaacaaATCCACAgaatgg |
8 |
UUGUGGAU | m7b | Disrupted | -0.215 | no TS |
0.68 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.176190736G>T | COSN8608024 | J11_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4778-5p |
ccACAGAATTggtaaagag |
1 |
AAUUCUGU | m8a | (m7a->m8a) | -0.063000 | -0.090000 |
-0.490000 |
hsa-miR-5591-3p |
ccacagaATGGGTAaagag |
1 |
AUACCCAU | m7b | Disrupted | -0.369000 | no TS |
4.000000 |
hsa-miR-660-5p |
ccacagAATGGGTAaagag |
1 |
UACCCAUU | m8a | Disrupted | -0.348000 | no TS |
3.050000 |