SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_002116
Gene Symbol: HLA-A
Description: Homo sapiens major histocompatibility complex, class I, A (HLA-A), transcript variant 2, mRNA.
Gene Location: chr6(+):29910246-29913661
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.29945576T>C COSN1330872 HX16T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1271-3p gtgtAGGCACaatgtgagg
 0 AGUGCCUG m6b Created no TS -0.138000 -12.740000
hsa-miR-323a-3p gtgtaggcaTAATGTGagg
 0 CACAUUAC m7a (m7a->m6b) NA NA -1.810000
hsa-miR-4289 gtgtaggCACAATGtgagg
 0 GCAUUGUG m7b Created no TS -0.063000 -0.570000
hsa-miR-4633-5p gtgtAGGCATAatgtgagg
 2
 AUAUGCCU m7b Disrupted -0.313000 no TS 3.570000
hsa-miR-532-5p gtgtAGGCATaatgtgagg
 2
 CAUGCCUU m6b Disrupted -0.118000 no TS 8.140000
hsa-miR-550a-3-5p gtgtAGGCACaatgtgagg
 0 AGUGCCUG m6b Created no TS -0.138000 -2.900000
hsa-miR-550a-5p gtgtAGGCACaatgtgagg
 0 AGUGCCUG m6b Created no TS -0.138000 -4.150000
hsa-miR-550b-2-5p gtgtAGGCACAatgtgagg
 0 AUGUGCCU m7b Created no TS -0.399000 -0.580000
hsa-miR-1271-3p gtgtAGGCACaatgtgagg
 0 AGUGCCUG m6b Created no TS -0.138 -12.74
hsa-miR-323a-3p gtgtaggcaTAATGTGagg
 0 CACAUUAC m7a (m7a->m6b) NA NA -1.81
hsa-miR-4289 gtgtaggCACAATGtgagg
 0 GCAUUGUG m7b Created no TS -0.063 -0.57
hsa-miR-4633-5p gtgtAGGCATAatgtgagg
 2
 AUAUGCCU m7b Disrupted -0.313 no TS 3.57
hsa-miR-532-5p gtgtAGGCATaatgtgagg
 2
 CAUGCCUU m6b Disrupted -0.118 no TS 8.14
hsa-miR-550a-3-5p gtgtAGGCACaatgtgagg
 0 AGUGCCUG m6b Created no TS -0.138 -2.9
hsa-miR-550a-5p gtgtAGGCACaatgtgagg
 0 AGUGCCUG m6b Created no TS -0.138 -4.15
hsa-miR-550b-2-5p gtgtAGGCACAatgtgagg
 0 AUGUGCCU m7b Created no TS -0.399 -0.58

Mutation Mutation ID Sample Name Cancer Type
chr6:g.29945578A>G COSN1330873 HX16T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-130a-5p gtaggcatAATGTGAggag
 5
 UUCACAUU m7b Disrupted -0.075000 no TS 3.530000
hsa-miR-23a-3p gtaggcatAATGTGAggag
 5
 AUCACAUU m7b Disrupted -0.038000 no TS 3.530000
hsa-miR-23b-3p gtaggcatAATGTGAggag
 5
 AUCACAUU m7b Disrupted -0.038000 no TS 3.520000
hsa-miR-23c gtaggcatAATGTGAggag
 5
 AUCACAUU m7b Disrupted -0.038000 no TS 3.520000
hsa-miR-323a-3p gtaggcaTAATGTGaggag
 0 CACAUUAC m7a Disrupted NA NA -1.810000
hsa-miR-342-3p gtaggcataGTGTGAGgag
 0 UCUCACAC m7b (m6c->m7b) no TS -0.144000 1.380000
hsa-miR-130a-5p gtaggcatAATGTGAggag
 0 UUCACAUU m7b Disrupted -0.075 no TS 3.53
hsa-miR-23a-3p gtaggcatAATGTGAggag
 0 AUCACAUU m7b Disrupted -0.038 no TS 3.53
hsa-miR-23b-3p gtaggcatAATGTGAggag
 0 AUCACAUU m7b Disrupted -0.038 no TS 3.52
hsa-miR-23c gtaggcatAATGTGAggag
 0 AUCACAUU m7b Disrupted -0.038 no TS 3.52
hsa-miR-323a-3p gtaggcaTAATGTGaggag
 0 CACAUUAC m7a Disrupted NA NA -1.81
hsa-miR-342-3p gtaggcataGTGTGAGgag
 0 UCUCACAC m7b (m6c->m7b) no TS -0.144 1.38

Mutation Mutation ID Sample Name Cancer Type
chr6:g.29945718G>A COSN6513647 BN37T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-767-5p caacttcATGGTGCActga
 2
 UGCACCAU m8a Disrupted -0.355000 no TS 4.080000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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