SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_025130
Gene Symbol: HKDC1
Description: Homo sapiens hexokinase domain containing 1 (HKDC1), mRNA.
Gene Location: chr10(+):70980058-71027315
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.69266908A>G COSN5882457 RK190_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3117-5p actctTAGTGTCTtgtact
 0 AGACACUA m8a Created no TS -0.225000 0.190000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.69267008A>G COSN5253372 HX19T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3144-5p tcctgagaGGTCCCCTttc
 0 AGGGGACC m8a Created no TS -0.309000 -5.350000
hsa-miR-3649 tcctgagAGGTCCCctttc
 0 AGGGACCU m7b Created no TS -0.212000 -4.700000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.69267365C>T COSN4716379 tumor_4189998 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][Burkitt_lymphoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3680-5p tgcttaaAGTGAGTtatgt
 0 GACUCACU m7b Created no TS -0.234000 -8.250000
hsa-miR-4315 tgcttAAAGCGagttatgt
 1
 CCGCUUUC m6b Disrupted -0.150000 no TS 1.950000
hsa-miR-4790-5p tgcttAAAGCGAgttatgt
 1
 AUCGCUUU m7b Disrupted -0.252000 no TS 1.060000
hsa-miR-4798-3p tgcttaaaGTGAGTTatgt
 0 AACUCACG m7a Created NA NA -7.550000
hsa-miR-3680-5p tgcttaaAGTGAGTtatgt
 0 GACUCACU m7b Created no TS -0.234000 -8.250000
hsa-miR-4315 tgcttAAAGCGagttatgt
 1
 CCGCUUUC m6b Disrupted -0.150000 no TS 1.950000
hsa-miR-4790-5p tgcttAAAGCGAgttatgt
 1
 AUCGCUUU m7b Disrupted -0.252000 no TS 1.060000
hsa-miR-4798-3p tgcttaaaGTGAGTTatgt
 0 AACUCACG m7a Created NA NA -7.550000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.69267494G>C COSN4891924 PCSI_0102_Pa_P [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-500a-5p ttgttttAAGGATTgttag
 3
 UAAUCCUU m7b Disrupted -0.192000 no TS 5.130000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.69267550A>G COSN1121781 HCC29T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-561-3p ttttccaatAAACTTTGca
 1
 CAAAGUUU m8a (m8a->m7b) -0.085000 no TS No effect
hsa-miR-561-3p ttttccaatAAACTTTGca
 1
 CAAAGUUU m8a (m8a->m7b) -0.085000 no TS No effect
hsa-miR-561-3p ttttccaatAAACTTTGca
 1
 CAAAGUUU m8a (m8a->m7b) -0.085000 no TS No effect
hsa-miR-561-3p ttttccaatAAACTTTGca
 0 CAAAGUUU m8a (m8a->m7b) -0.085 no TS No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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