SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_031415 |
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Gene Symbol: | GSDMC |
Description: | Homo sapiens gasdermin C (GSDMC), mRNA. |
Gene Location: | chr8(-):130760441-130799134 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.129748255G>A | COSN4876806 | tumor_4188900 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-511 |
gttAAAGACAtaagcgttt |
0 | GUGUCUUU | m7b | (m6c->m7b) | no TS | -0.189000 |
-0.140000 |
|
hsa-miR-654-3p |
gttaaAGACATAagcgttt |
0 | UAUGUCUG | m7a | Created | no TS | -0.133000 |
-4.560000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.129748256C>T | COSN15397146 | 0008_CRUK_PC_0008_T1_DNA | [prostate][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.129748293T>G | COSN9255609 | C0031T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1277-5p |
aagagtttATATATTTgtc |
2 |
AAAUAUAU | m8a | Disrupted | -0.154000 | -0.086000 |
0.020000 |
hsa-miR-4799-5p |
aagagTTTAGATatttgtc |
0 | AUCUAAAU | m7a | Created | NA | NA |
-1.600000 |
hsa-miR-5011-5p |
aagagttTATATATttgtc |
2 |
UAUAUAUA | m7b | Disrupted | -0.140000 | -0.055000 |
-1.170000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
129748255 | rs111395458 | G | |||||||
A |
hsa-miR-511-5p hsa-miR-654-3p hsa-miR-6830-3p |
0 |
AAAGACAtaagcg aaAGACATAagcg AAAGACAtaagcg |
Created Created Created |
N N N |
-0.189 -0.133 -0.095 |