SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_080819
Gene Symbol: GPR78
Description: Homo sapiens G protein-coupled receptor 78 (GPR78), transcript variant 1, mRNA.
Gene Location: chr4(+):8582290-8589520
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.8587719G>T COSN9243989 AOCS-158-1-6 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-224-5p taaGTGACTTctgttcatg
 0 CAAGUCAC m7b (m6b->m7b) no TS -0.116000 -2.090000
hsa-miR-4274 taagtGACTGCTGttcatg
 2
 CAGCAGUC m8a Disrupted -0.291000 -0.118000 -0.010000
hsa-miR-4704-3p taaGTGACTGctgttcatg
 2
 UCAGUCAC m7b (m7b->m6b) -0.220000 -0.030000 0.080000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.8587924C>T COSN6846414 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1271-3p tggCAGGCACgggcagtcc
 0 AGUGCCUG m7b (m7b->m6b) -0.223000 -0.178000 0.120000
hsa-miR-4641 tggcaggCATGGGCAgtcc
 0 UGCCCAUG m8a Created no TS -0.215000 No effect
hsa-miR-550a-3-5p tggCAGGCACgggcagtcc
 0 AGUGCCUG m7b (m7b->m6b) -0.217000 -0.172000 No effect
hsa-miR-550a-5p tggCAGGCACgggcagtcc
 0 AGUGCCUG m7b (m7b->m6b) -0.217000 -0.172000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr4:g.8588513C>T COSN6846417 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3680-5p atgagtgAGTGAGTgaatg
 0 GACUCACU m7b Created no TS -0.021000 -1.430000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.8589531C>G COSN6846421 RK211_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2110 ggttgTTCCCCAtttaaag
 0 UUGGGGAA m7b Disrupted -0.269000 -0.127000 1.210000
hsa-miR-224-3p ggttgttccCCATTTaaag
 0 AAAAUGGU m6b Disrupted 0.009000 no TS 2.586000
hsa-miR-4271 ggttgTTCCCCatttaaag
 0 GGGGGAAG m6b Disrupted -0.312000 -0.205000 No effect
hsa-miR-4506 ggttgttcCCCATTTaaag
 0 AAAUGGGU m7a Disrupted NA NA 10.630000
hsa-miR-4694-3p ggttgttccCCATTTaaag
 0 CAAAUGGA m6b Disrupted 0.011000 no TS 6.270000
hsa-miR-522-3p ggttgttccCCATTTaaag
 0 AAAAUGGU m6b Disrupted 0.013000 no TS 5.430000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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