SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001145667
Gene Symbol: GLG1
Description: Homo sapiens golgi glycoprotein 1 (GLG1), transcript variant 2, mRNA.
Gene Location: chr16(-):74481325-74641042
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.74449390T>A COSN407725 TCGA-BH-A0HN-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4511 agaagattcAGTTCTTatg
 0 GAAGAACU m7b (m6b->m7b) 0.103000 0.152000 No effect
hsa-miR-4773 agaagattCTGTTCTtatg
 0 CAGAACAG m7b Disrupted -0.021000 -0.046000 0.250000
hsa-miR-5187-3p agaaGATTCAGTtcttatg
 0 ACUGAAUC m8a Created no TS 0.006000 -0.030000

Mutation Mutation ID Sample Name Cancer Type
chr16:g.74449752G>A COSN4767227 tumor_4142267 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-376c tgcagtTCTATGTTagtgc
 15
 AACAUAGA m8a Created -0.344000 -0.258000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr16:g.74451560C>G 9_136254 CRC-1-Tumor Colorectal adenocarcinoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2467-3p cactcttgCCTCTGCTctg
 5
 AGCAGAGG m8a Disrupted 0.137 0.117 0.03
hsa-miR-31-5p cacTCTTGCCTctgctctg
 3
 AGGCAAGA m8a Disrupted 0.036 -0.043 4.68

Mutation Mutation ID Sample Name Cancer Type
chr16:g.74451824C>T COSN522274 TCGA-A2-A0EV-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1827 tggccatcCTGCCTCAttc
 2
 UGAGGCAG m8a Created 0.040000 -0.008000 No effect
hsa-miR-2392 tggCCATCCTgcctcattc
 1
 UAGGAUGG m7b (m6c->m7b) 0.070000 0.088000 No effect
hsa-miR-3197 tggccatccCGCCTCattc
 2
 GGAGGCGC m6b Disrupted -0.161000 -0.061000 No effect
hsa-miR-940 tggccatCCTGCCTcattc
 0 AAGGCAGG m7b Created -0.207000 -0.257000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr16:g.74451922G>T COSN1190544 BN03T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1225-5p ttgctgcgtGTACCCACtc
 6
 GUGGGUAC m8a (m8a->m7a) -0.092000 no TS 0.010000
hsa-miR-555 ttgctgcgtTTACCCactc
 0 AGGGUAAG m6b Created no TS 0.011000 -0.050000

Mutation Mutation ID Sample Name Cancer Type
chr16:g.74452104T>C ICGC_1419245 TCGA-AP-A0LD-01A-11W-A062-09 UterineCorpusEndometrioidCarcinoma(TCGA,US)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1295b-3p gacaatGGCCTATaaaggt
 0 AAUAGGCC m7b Created no TS -0.293 -0.01
hsa-miR-15a-3p gacaATGGCCTataaaggt
 0 CAGGCCAU m7b Created no TS -0.228 -0.03
hsa-miR-4529-5p gacaATGGCCTataaaggt
 0 AGGCCAUC m7a Created NA NA -0.01
hsa-miR-5704 gacaaTGGCCTAtaaaggt
 0 UUAGGCCA m7b Created -0.034 -0.204 No effect

Mutation Mutation ID Sample Name Cancer Type
chr16:g.74452209T>G COSN522275 TCGA-E2-A154-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3922-5p cgggagggGGCCTTGAaga
 2
 UCAAGGCC m8a Created -0.200000 -0.337000 No effect
hsa-miR-4313 cgggAGGGGGCcttgaaga
 0 AGCCCCCU m7b Created no TS -0.101000 0.620000
hsa-miR-4753-5p cgggagggGGCCTTGaaga
 1
 CAAGGCCA m7a Created -0.003000 -0.003000 No effect
hsa-miR-561-5p cgggaggggTCCTTGAaga
 0 AUCAAGGA m7b (m7b->m6b) 0.051000 0.052000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr16:g.74452243G>A COSN1081711 TCGA-AP-A051-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3616-5p aagctctgCACTTCATcag
 0 AUGAAGUG m8a Created no TS 0.055000 No effect
hsa-miR-3678-3p aagCTCTGCActtcatcag
 5
 CUGCAGAG m7b (m6c->m7b) 0.241000 0.227000 -0.100000
hsa-miR-373-3p aagctctGCACTTCatcag
 0 GAAGUGCU m7a Created NA NA No effect
hsa-miR-4795-5p aagctctgCACTTCatcag
 1
 AGAAGUGG m6b Created 0.237000 0.257000 No effect
hsa-miR-519a-3p aagctcTGCACTTcatcag
 1
 AAAGUGCA m7b Created 0.088000 0.080000 -1.270000
hsa-miR-519b-3p aagctcTGCACTTcatcag
 1
 AAAGUGCA m7b Created 0.088000 0.098000 -0.010000
hsa-miR-519c-3p aagctcTGCACTTcatcag
 1
 AAAGUGCA m7b Created 0.097000 0.107000 -0.010000
hsa-miR-573 aagctctgCACTTCAtcag
 0 CUGAAGUG m7b Created no TS 0.055000 No effect
hsa-miR-3616-5p aagctctgCACTTCATcag
 0 AUGAAGUG m8a Created no TS 0.055 No effect
hsa-miR-3678-3p aagCTCTGCActtcatcag
 0 CUGCAGAG m7b (m6c->m7b) 0.241 0.227 -0.1
hsa-miR-373-3p aagctctGCACTTCatcag
 0 GAAGUGCU m7a Created NA NA No effect
hsa-miR-4795-5p aagctctgCACTTCatcag
 0 AGAAGUGG m6b Created 0.237 0.257 No effect
hsa-miR-519a-3p aagctcTGCACTTcatcag
 0 AAAGUGCA m7b Created 0.088 0.08 -1.27
hsa-miR-519b-3p aagctcTGCACTTcatcag
 0 AAAGUGCA m7b Created 0.088 0.098 -0.01
hsa-miR-519c-3p aagctcTGCACTTcatcag
 0 AAAGUGCA m7b Created 0.097 0.107 -0.01
hsa-miR-573 aagctctgCACTTCAtcag
 0 CUGAAGUG m7b Created no TS 0.055 No effect

Mutation Mutation ID Sample Name Cancer Type
chr16:g.74452978G>A COSN1081710 TCGA-AX-A05T-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3130-3p ctcctcaccGTGCAGCagc
 0 GCUGCACC m7a (m7a->m6a) NA NA 0.010000
hsa-miR-5011-3p ctcctcaCCATGCAgcagc
 2
 GUGCAUGG m7b Created 0.095000 -0.021000 No effect
hsa-miR-3130-3p ctcctcaccGTGCAGCagc
 0 GCUGCACC m7a (m7a->m6a) NA NA 0.01
hsa-miR-5011-3p ctcctcaCCATGCAgcagc
 0 GUGCAUGG m7b Created 0.095 -0.021 No effect

Mutation Mutation ID Sample Name Cancer Type
chr16:g.74453113C>A COSN1081709 TCGA-B5-A11E-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4426 tgtacagCCATCTTgtata
 2
 GAAGAUGG m7b Created 0.169000 0.024000 -1.010000
hsa-miR-4446-3p tgtaCAGCCCTcttgtata
 1
 CAGGGCUG m7b Disrupted -0.324000 -0.059000 0.060000
hsa-miR-4647 tgtacagCCATCTTgtata
 2
 GAAGAUGG m7b Created 0.194000 0.049000 -1.430000
hsa-miR-4662b tgtacagCCATCTTgtata
 2
 AAAGAUGG m7b Created 0.194000 0.077000 -0.040000
hsa-miR-4675 tgtACAGCCCtcttgtata
 2
 GGGGCUGU m7b (m7b->m6c) -0.369000 -0.110000 0.010000
hsa-miR-4721 tgtacAGCCCTCttgtata
 2
 UGAGGGCU m7b Disrupted -0.242000 0.005000 0.010000
hsa-miR-4741 tgtACAGCCCtcttgtata
 2
 CGGGCUGU m7b (m7b->m6c) -0.305000 -0.027000 0.170000

Mutation Mutation ID Sample Name Cancer Type
chr16:g.74453116G>A COSN1081708 TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-296-3p gtttgtaCAACCCTCttgt
 0 GAGGGUUG m8a Created no TS -0.247000 No effect
hsa-miR-3613-5p gtttGTACAACcctcttgt
 0 UGUUGUAC m7b Created no TS -0.162000 0.010000
hsa-miR-4446-3p gtttgtaCAGCCCTcttgt
 1
 CAGGGCUG m7b Disrupted -0.324000 -0.059000 0.060000
hsa-miR-4675 gtttgtACAGCCCtcttgt
 2
 GGGGCUGU m7b Disrupted -0.369000 -0.110000 0.010000
hsa-miR-4718 gtttGTACAGCcctcttgt
 3
 AGCUGUAC m7b Disrupted -0.620000 -0.379000 0.570000
hsa-miR-4721 gtttgtacAGCCCTCttgt
 2
 UGAGGGCU m7b Disrupted -0.242000 0.005000 0.010000
hsa-miR-4741 gtttgtACAGCCCtcttgt
 2
 CGGGCUGU m7b Disrupted -0.305000 -0.027000 0.170000
hsa-miR-296-3p gtttgtaCAACCCTCttgt
 0 GAGGGUUG m8a Created no TS -0.247 No effect
hsa-miR-3613-5p gtttGTACAACcctcttgt
 0 UGUUGUAC m7b Created no TS -0.162 0.01
hsa-miR-4446-3p gtttgtaCAGCCCTcttgt
 0 CAGGGCUG m7b Disrupted -0.324 -0.059 0.06
hsa-miR-4675 gtttgtACAGCCCtcttgt
 0 GGGGCUGU m7b Disrupted -0.369 -0.11 0.01
hsa-miR-4718 gtttGTACAGCcctcttgt
 0 AGCUGUAC m7b Disrupted -0.62 -0.379 0.57
hsa-miR-4721 gtttgtacAGCCCTCttgt
 0 UGAGGGCU m7b Disrupted -0.242 0.005 0.01
hsa-miR-4741 gtttgtACAGCCCtcttgt
 0 CGGGCUGU m7b Disrupted -0.305 -0.027 0.17

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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