SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001002295 |
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Gene Symbol: | GATA3 |
Description: | Homo sapiens GATA binding protein 3 (GATA3), transcript variant 1, mRNA. |
Gene Location: | chr10(+):8096666-8117164 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.8074597C>A | COSN1123049 | HX12T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4774-5p |
aggaaATACCAGttctggg |
0 | UCUGGUAU | m7b | Disrupted | -0.118000 | no TS |
9.150000 |
hsa-miR-5681b |
aggaAATACCagttctggg |
0 | AGGUAUUG | m6b | Disrupted | -0.025000 | no TS |
0.390000 |
hsa-miR-582-3p |
aggaaatACCAGTTctggg |
2 |
UAACUGGU | m7b | Disrupted | -0.166000 | -0.057000 |
-0.120000 |
hsa-miR-643 |
aggaaATACAAGTtctggg |
0 | ACUUGUAU | m8a | Created | no TS | -0.079000 |
-1.580000 |
hsa-miR-4774-5p |
aggaaATACCAGttctggg |
0 | UCUGGUAU | m7b | Disrupted | -0.118 | no TS |
9.15 |
hsa-miR-5681b |
aggaAATACCagttctggg |
0 | AGGUAUUG | m6b | Disrupted | -0.025 | no TS |
0.39 |
hsa-miR-582-3p |
aggaaatACCAGTTctggg |
0 | UAACUGGU | m7b | Disrupted | -0.166 | -0.057 |
-0.12 |
hsa-miR-643 |
aggaaATACAAGTtctggg |
0 | ACUUGUAU | m8a | Created | no TS | -0.079 |
-1.58 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.8075014G>A | COSN8721903 | AOCS-055-1-7 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-5682 |
gcctGTGCTAagggtagca |
0 | GUAGCACC | m6b | Created | no TS | -0.114000 |
-14.750000 |