SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_000148
Gene Symbol: FUT1
Description: Homo sapiens fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group) (FUT1), mRNA.
Gene Location: chr19(-):49251267-49258647
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.48748776C>T COSN8754051 SS6003317 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1273f aaaCCATCTCtagttggcc
 1
 GGAGAUGG m7b (m7b->m6c) -0.144000 no TS No effect
hsa-miR-4426 aaaCCATCTTtagttggcc
 0 GAAGAUGG m7b (m6c->m7b) no TS -0.116000 -0.040000
hsa-miR-4647 aaaCCATCTTtagttggcc
 0 GAAGAUGG m7b (m6c->m7b) no TS -0.116000 -0.010000
hsa-miR-4662b aaaCCATCTTTagttggcc
 0 AAAGAUGG m8a Created no TS -0.116000 No effect
hsa-miR-4708-5p aaacCATCTCTagttggcc
 0 AGAGAUGC m7a Disrupted NA NA No effect
hsa-miR-4744 aaaccaTCTTTAGttggcc
 0 UCUAAAGA m7b Created no TS -0.015000 No effect
hsa-miR-708-3p aaaccatcTCTAGTTGgcc
 5
 CAACUAGA m8a Disrupted -0.069000 -0.097000 No effect


Mutation Mutation ID Sample Name Cancer Type
chr19:g.48748795G>T 13_124 SJMB016_D Medulloblastoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr19:g.48749061C>G COSN15558545 AOCS-137-1-X [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-541-3p tctGCCCACCtcggcctcc
 2
 UGGUGGGC m7b (m7b->m6c) -0.334000 -0.231000 1.060000
hsa-miR-654-5p tctGCCCACCtcggcctcc
 2
 UGGUGGGC m7b (m7b->m6c) -0.287000 -0.194000 1.060000
hsa-miR-541-3p tctGCCCACCtcggcctcc
 2
 UGGUGGGC m7b (m7b->m6c) -0.334000 -0.231000 1.060000
hsa-miR-654-5p tctGCCCACCtcggcctcc
 2
 UGGUGGGC m7b (m7b->m6c) -0.287000 -0.194000 1.060000

Mutation Mutation ID Sample Name Cancer Type
chr19:g.48749357T>A ICGC_D504397A-2A78-11E2-951E-21FD496BB9B8 CPCG_0103_Pr_P_P5 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-532-5p tgggattacAGGCATGagc
 0 CAUGCCUU m7a (m6a->m7a) NA NA -0.02

Mutation Mutation ID Sample Name Cancer Type
chr19:g.48749887G>C COSN8974474 AOCS-155-3-5 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1343 tgccCCCAGGAatggggaa
 2
 CUCCUGGG m7b Disrupted -0.281000 no TS 1.550000
hsa-miR-4731-5p tgcCCCCAGCAatggggaa
 0 UGCUGGGG m8a Created no TS -0.354000 -1.680000
hsa-miR-5589-5p tgccCCCAGCaatggggaa
 4
 GGCUGGGU m6b Created -0.115000 -0.238000 -0.010000

Mutation Mutation ID Sample Name Cancer Type
chr19:g.48750025A>G COSN8261410 PCSI_0083_Pa_P_526 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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