SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_181446
Gene Symbol:	FSHR
Description:	Homo sapiens follicle stimulating hormone receptor (FSHR), transcript variant 1, mRNA.
Gene Location:	chr2(-):49189295-49381666
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Browse Pathways

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr2:g.48962353C>T			COSN9376469		AOCS-056-1-X		[ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-590-3p	tgacttgttTAAAATTgtt	0	UAAUUUUA	m7b	(m6b->m7b)	no TS	-0.011000	-2.260000

Mutation			Mutation ID		Sample Name		Cancer Type
chr2:g.48962411T>A			COSN15045628		LP6005500-DNA_B01		[oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-3938	ggacAGGGAATattcttgg	0	AAUUCCCU	m7b	Created	no TS	-0.288000	-3.140000

Mutation			Mutation ID		Sample Name		Cancer Type
chr2:g.48962466A>C			COSN9376470		AOCS-153-1-2		[ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation			Mutation ID		Sample Name		Cancer Type
chr2:g.48962597G>T			COSN7131646		8069446		[pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation			Mutation ID		Sample Name		Cancer Type
chr2:g.48962661A>C			COSN5792937		HCC171		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation			Mutation ID		Sample Name		Cancer Type
chr2:g.48962703G>A			COSN8609294		J65_T		[lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-200b-3p	ctgAGTATTAaatgataat	0	UAAUACUG	m7a	(m6b->m7a)	no TS	-0.057000	-1.560000
hsa-miR-200c-3p	ctgAGTATTAaatgataat	0	UAAUACUG	m7a	(m6b->m7a)	no TS	-0.057000	-1.550000
hsa-miR-374c-5p	ctgaGTATTAaatgataat	1	AUAAUACA	m6b	Created	-0.119000	-0.176000	-0.020000
hsa-miR-382-3p	ctgagtattGAATGATaat	5	AAUCAUUC	m7b	(m7b->m6b)	-0.322000	-0.077000	1.820000
hsa-miR-4272	ctgagtaTTGAATGataat	0	CAUUCAAC	m7a	Disrupted	NA	NA	0.010000
hsa-miR-429	ctgAGTATTAaatgataat	0	UAAUACUG	m7a	(m6b->m7a)	no TS	-0.057000	0.460000
hsa-miR-5696	ctgagtatTAAATGAtaat	0	CUCAUUUA	m7b	Created	no TS	-0.128000	-1.440000
hsa-miR-655	ctgaGTATTAaatgataat	1	AUAAUACA	m6b	Created	-0.119000	-0.176000	-0.030000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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