SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001012426
Gene Symbol: FOXP4
Description: Homo sapiens forkhead box P4 (FOXP4), transcript variant 1, mRNA.
Gene Location: chr6(+):41514163-41570122
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.41599783G>A COSN7883038 8031704 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-615-5p gccaggctGGACCCCggct
 1
 GGGGGUCC m7b Disrupted -0.093000 -0.005000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr6:g.41600484T>C COSN1333090 HCC85T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5093 ctccttggaCATTTCCcaa
 0 AGGAAAUG m7b (m6c->m7b) no TS 0.103000 No effect
hsa-miR-5093 ctccttggaCATTTCCcaa
 0 AGGAAAUG m7b (m6c->m7b) no TS 0.103 No effect

Mutation Mutation ID Sample Name Cancer Type
chr6:g.41601557T>C ICGC_DB0BC824-2A78-11E2-B303-24FD496BB9B8 CPCG_0103_Pr_P_P6 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1827 ctgcaacctCTGCCTCcca
 0 UGAGGCAG m7b (m6c->m7b) -0.277 -0.349 -0.09
hsa-miR-2467-3p ctgcaaCCTCTGCctccca
 0 AGCAGAGG m7b Created -0.236 -0.332 No effect
hsa-miR-377-5p ctgCAACCTCTgcctccca
 0 AGAGGUUG m8a Created no TS -0.007 -1.3
hsa-miR-4257 ctgcaACCTCTGcctccca
 0 CCAGAGGU m7b Created no TS -0.047 No effect

Mutation Mutation ID Sample Name Cancer Type
chr6:g.41601680T>G COSN2162176 RK184_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-376c tcTCTATGTTggtcaggct
 1
 AACAUAGA m8a (m8a->m7a) -0.021000 0.006000 2.270000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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