SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001451 |
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Gene Symbol: | FOXF1 |
Description: | Homo sapiens forkhead box F1 (FOXF1), mRNA. |
Gene Location: | chr16(+):86544132-86548070 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr16:g.86513176C>T | COSN4892789 | PCSI_0052_Pa_X | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr16:g.86513257G>A | COSN9445635 | AOCS-168-1-8 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1184 |
cagcGCTGCAGttggcacc |
0 | CCUGCAGC | m7b | Created | no TS | -0.147000 |
-0.440000 |
|
hsa-miR-4418 |
cagcgCTGCAGTtggcacc |
0 | CACUGCAG | m7b | Created | no TS | -0.074000 |
-0.390000 |
|
hsa-miR-509-3-5p |
cagcgCTGCAGTtggcacc |
0 | UACUGCAG | m7b | Created | no TS | -0.092000 |
-0.200000 |
|
hsa-miR-509-5p |
cagcgCTGCAGTtggcacc |
0 | UACUGCAG | m7b | Created | no TS | -0.102000 |
-0.130000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr16:g.86513506T>A | COSN8393161 | tumor_4120193 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-548a-5p |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
-0.010000 |
|
hsa-miR-548ab |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
-0.270000 |
|
hsa-miR-548ak |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
-1.370000 |
|
hsa-miR-548am-5p |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
-0.060000 |
|
hsa-miR-548ap-5p |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
0.110000 |
|
hsa-miR-548ar-5p |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
-0.050000 |
|
hsa-miR-548as-5p |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
0.090000 |
|
hsa-miR-548at-5p |
attatcaaaAACTTTTatt |
10 |
AAAAGUUA | m7a | (m6b->m7a) | 0.005000 | 0.005000 |
-0.010000 |
|
hsa-miR-548au-5p |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
-0.110000 |
|
hsa-miR-548av-5p |
attatcaaaTACTTTTatt |
0 | AAAAGUAC | m7a | (m7a->m6b) | NA | NA | No effect | |
hsa-miR-548b-5p |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA | No effect | |
hsa-miR-548c-5p |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
-0.060000 |
|
hsa-miR-548d-5p |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
-0.240000 |
|
hsa-miR-548h-5p |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
-0.230000 |
|
hsa-miR-548i |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
-0.030000 |
|
hsa-miR-548j |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
0.060000 |
|
hsa-miR-548k |
attatcaaaTACTTTTatt |
0 | AAAAGUAC | m7a | (m7a->m6b) | NA | NA | No effect | |
hsa-miR-548l |
attatcaaATACTTTTatt |
7 |
AAAAGUAU | m8a | Disrupted | -0.105000 | no TS |
1.750000 |
|
hsa-miR-548n |
attatcaaaTACTTTTatt |
6 |
CAAAAGUA | m7b | (m7b->m6c) | -0.086000 | 0.043000 |
-0.340000 |
|
hsa-miR-548o-5p |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
-0.060000 |
|
hsa-miR-548w |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
-0.030000 |
|
hsa-miR-548y |
attatcaaaTACTTTTatt |
0 | AAAAGUAA | m7a | (m7a->m6b) | NA | NA |
-0.200000 |
|
hsa-miR-561-3p |
attatcaaAAACTTTtatt |
8 |
CAAAGUUU | m7b | Created | 0.073000 | -0.019000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr16:g.86513619G>C | COSN7157698 | 8057528 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-223-3p |
gagcgggAACTGACAagag |
0 | UGUCAGUU | m8a | Created | no TS | -0.088000 |
-1.590000 |
|
hsa-miR-4277 |
gagcggGAACTGacaagag |
0 | GCAGUUCU | m6b | Created | no TS | 0.000000 |
-0.100000 |
|
hsa-miR-4697-3p |
gagcgggaACTGACAagag |
0 | UGUCAGUG | m7a | Created | no TS | -0.048000 |
-10.790000 |
|
hsa-miR-584-3p |
gagcgGGAACTGAcaagag |
0 | UCAGUUCC | m8a | Created | no TS | -0.140000 |
-4.990000 |
|
hsa-miR-668 |
gagcgggaAGTGACAagag |
1 |
UGUCACUC | m7a | Disrupted | -0.043000 | no TS |
0.180000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr16:g.86513841T>C | COSN5413406 | RK134_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-330-3p |
tctgttaTGCTTTGtcttg |
0 | GCAAAGCA | m7b | Created | no TS | -0.106000 |
-1.150000 |
|
hsa-miR-4422 |
tctgttATGCTTTgtcttg |
0 | AAAAGCAU | m7b | Created | no TS | -0.081000 |
-1.940000 |
|
hsa-miR-4803 |
tctgTTATGTTttgtcttg |
1 |
UAACAUAA | m7b | Disrupted | 0.016000 | no TS |
10.270000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr16:g.86513970G>A | 9_98588 | CRC-8-Tumor | Colorectal adenocarcinoma | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-5587-5p |
ccgGTGACCAcgcggattc |
7 |
AUGGUCAC | m7b | (m6b->m7b) | no TS | -0.028 |
-3.9 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr16:g.86513993C>T | COSN15435706 | AOCS-150-8-X | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-20a-3p |
ttgcggggATGCAGaaagg |
0 | ACUGCAUU | m6b | Created | no TS | -0.056000 |
-0.360000 |
hsa-miR-324-5p |
ttgcgGGGATGCagaaagg |
0 | CGCAUCCC | m7b | Created | no TS | -0.318000 |
-4.820000 |
hsa-miR-4520a-5p |
ttgcggggACGCAGaaagg |
8 |
CCUGCGUG | m6b | Disrupted | -0.154000 | no TS |
0.130000 |
hsa-miR-4520b-5p |
ttgcggggACGCAGaaagg |
8 |
CCUGCGUG | m6b | Disrupted | -0.154000 | no TS |
0.130000 |
hsa-miR-544a |
ttgcggggaTGCAGAAagg |
8 |
AUUCUGCA | m7b | (m6c->m7b) | -0.044000 | -0.185000 |
-2.170000 |
hsa-miR-20a-3p |
ttgcggggATGCAGaaagg |
0 | ACUGCAUU | m6b | Created | no TS | -0.056000 |
-0.360000 |
hsa-miR-324-5p |
ttgcgGGGATGCagaaagg |
0 | CGCAUCCC | m7b | Created | no TS | -0.318000 |
-4.820000 |
hsa-miR-4520a-5p |
ttgcggggACGCAGaaagg |
8 |
CCUGCGUG | m6b | Disrupted | -0.154000 | no TS |
0.130000 |
hsa-miR-4520b-5p |
ttgcggggACGCAGaaagg |
8 |
CCUGCGUG | m6b | Disrupted | -0.154000 | no TS |
0.130000 |
hsa-miR-544a |
ttgcggggaTGCAGAAagg |
8 |
AUUCUGCA | m7b | (m6c->m7b) | -0.044000 | -0.185000 |
-2.170000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
86513508 | rs183461430 | C | C |
hsa-miR-548az-5p hsa-miR-548l hsa-miR-548n hsa-miR-548t-5p |
6 7 6 6 |
caaatACTTTTAt caaATACTTTtat caaaTACTTTTAt caaatACTTTTAt |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
-0.008 -0.105 -0.135 -0.008 |
A |
hsa-miR-3163 hsa-miR-4282 hsa-miR-944 |
6 6 7 |
caaataATTTTAT caaatAATTTTAt caAATAATTttat |
Created Created Created |
N N N |
-0.019 0.077 -0.044 |
|||
86513509 | rs148855296 | T | T |
hsa-miR-548az-5p hsa-miR-548l hsa-miR-548n hsa-miR-548t-5p |
6 7 6 6 |
aaatACTTTTAtt aaATACTTTtatt aaaTACTTTTAtt aaatACTTTTAtt |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
-0.008 -0.105 -0.135 -0.008 |
86513839 | rs142129039 | T | T |
hsa-miR-4803 |
1 |
ctgTTATGTTttg |
Disrupted |
N |
0.016 |
C |
hsa-miR-194-5p hsa-miR-424-3p |
1 1 |
CTGTTACgttttg ctgttACGTTTTg |
Created Created |
N N |
-0.092 -0.1 |