SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_002026
Gene Symbol:	FN1
Description:	Homo sapiens fibronectin 1 (FN1), transcript variant 3, mRNA.
Gene Location:	chr2(-):216225178-216300791
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Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr2:g.215360735A>G			COSN6168849		RK150_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation			Mutation ID		Sample Name		Cancer Type
chr2:g.215360897A>G			COSN1824386		RK004_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-2355-3p	actgtggaAGGACAActgt	0	AUUGUCCU	m7b	Created	no TS	-0.157000	-0.900000
hsa-miR-3124-3p	actgtGGAAAGacaactgt	0	ACUUUCCU	m6b	Disrupted	-0.340000	-0.297000	0.020000
hsa-miR-3667-3p	actgtGGAAGGacaactgt	0	ACCUUCCU	m6b	Created	no TS	-0.097000	-0.210000
hsa-miR-511	actgtggAAAGACAactgt	0	GUGUCUUU	m7b	Disrupted	-0.094000	no TS	-0.220000
hsa-miR-676-3p	actgtggaAGGACAactgt	0	CUGUCCUA	m6b	Created	no TS	-0.108000	-3.890000
hsa-miR-2355-3p	actgtggaAGGACAActgt	0	AUUGUCCU	m7b	Created	no TS	-0.157	-0.9
hsa-miR-3124-3p	actgtGGAAAGacaactgt	0	ACUUUCCU	m6b	Disrupted	-0.34	-0.297	0.02
hsa-miR-3667-3p	actgtGGAAGGacaactgt	0	ACCUUCCU	m6b	Created	no TS	-0.097	-0.21
hsa-miR-511	actgtggAAAGACAactgt	0	GUGUCUUU	m7b	Disrupted	-0.094	no TS	-0.22
hsa-miR-676-3p	actgtggaAGGACAactgt	0	CUGUCCUA	m6b	Created	no TS	-0.108	-3.89

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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