SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001039885
Gene Symbol: FKRP
Description: Homo sapiens fukutin related protein (FKRP), transcript variant 2, mRNA.
Gene Location: chr19(+):47249302-47261832
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.46757943G>A COSN15507746 AOCS-135-8-X [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4679 ttctgaATCACAGctccac
 0 UCUGUGAU m7b Created no TS -0.087000 0.020000
hsa-miR-558 ttctgaatcGCAGCTCcac
 0 UGAGCUGC m7b (m7b->m6c) -0.156000 no TS 0.570000
hsa-miR-4679 ttctgaATCACAGctccac
 0 UCUGUGAU m7b Created no TS -0.087000 0.020000
hsa-miR-558 ttctgaatcGCAGCTCcac
 0 UGAGCUGC m7b (m7b->m6c) -0.156000 no TS 0.570000


Mutation Mutation ID Sample Name Cancer Type
chr19:g.46758095A>T COSN8261198 ASHPC_0017_Pa_P [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr19:g.46758356G>T COSN1769802 RK148_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3163 tccttATTTTATtatgcac
 0 UAUAAAAU m7b Created no TS 0.021000 -3.470000
hsa-miR-3671 tcctTATTTGATtatgcac
 2
 AUCAAAUA m8a Disrupted -0.053000 no TS 4.130000
hsa-miR-5692a tccTTATTTGattatgcac
 0 CAAAUAAU m7a (m7a->m6a) 0.239000 0.239000 -0.110000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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