| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_002011 |
|---|---|
| Gene Symbol: | FGFR4 |
| Description: | Homo sapiens fibroblast growth factor receptor 4 (FGFR4), transcript variant 1, mRNA. |
| Gene Location: | chr5(+):176513920-176525126 |
| Browse Associations | |
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| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr5:g.177097909G>T | COSN7923526 | 8030340 | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-1247-3p |
ccaTCCCGGGtttggctga |
1 |
CCCCGGGA | m7b | (m7b->m6b) | -0.267000 | no TS |
12.490000 |
| hsa-miR-548at-3p |
ccatccCGGTTTTGgctga |
0 | CAAAACCG | m8a | Created | no TS | -0.011000 |
3.680000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr5:g.177098006T>C | COSN14824824 | 8068597 | [pancreas][NS][carcinoid-endocrine_tumour][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3689d |
ccccaCACCTCCCcctgct |
0 | GGGAGGUG | m8a | Disrupted | -0.114000 | no TS |
3.630000 |
| hsa-miR-4455 |
cccCACACCCccccctgct |
0 | AGGGUGUG | m7b | (m6b->m7b) | no TS | -0.069000 |
-3.710000 |
| hsa-miR-4716-3p |
ccccacaccTCCCCCTgct |
0 | AAGGGGGA | m7b | (m7b->m6c) | -0.133000 | no TS |
0.830000 |
| hsa-miR-4723-5p |
ccccacacCTCCCCCtgct |
0 | UGGGGGAG | m7b | Disrupted | -0.176000 | no TS |
7.990000 |
| hsa-miR-5698 |
ccccacacCTCCCCCtgct |
0 | UGGGGGAG | m7b | Disrupted | -0.195000 | no TS |
-0.160000 |