| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
| Home | Search | Help | Download | |||||
| RefSeq ID: | NM_001144915 |
|---|---|
| Gene Symbol: | FGFR2 |
| Description: | Homo sapiens fibroblast growth factor receptor 2 (FGFR2), transcript variant 1, mRNA. |
| Gene Location: | chr10(-):123237843-123356159 |
| Browse Associations | |
| Browse Pathways | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr10:g.121478481G>A | cosmic_v64_1760532 | Leukemia/T-ALL | ||||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-452-3p |
gccgtgcaAGATGAatgca |
0 | CUCAUCUG | m6b | Disrupted | -0.051 | no TS |
4.9 |
| hsa-miR-507 |
gccGTGCAAAAtgaatgca |
0 | UUUUGCAC | m8a | Created | no TS | -0.245 |
-0.36 |
| hsa-miR-557 |
gccGTGCAAAatgaatgca |
0 | GUUUGCAC | m7b | (m6c->m7b) | no TS | -0.234 |
-0.36 |
| hsa-miR-5696 |
gccgtgcaAAATGAatgca |
0 | CUCAUUUA | m6b | Created | 0.05 | 0.085 | No effect |
| hsa-miR-664-3p |
gccgtgcaaAATGAATgca |
0 | UAUUCAUU | m7b | (m6b->m7b) | no TS | -0.031 | No effect |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr10:g.121478674A>T | 9_18755 | CRC-3-Tumor | Colorectal adenocarcinoma | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3664-5p |
ttgaaacACAGAGTTgttc |
6 |
AACUCUGU | m8a | Disrupted | -0.153 | no TS |
7.0 |
| hsa-miR-4302 |
ttgaaACACTGagttgttc |
9 |
CCAGUGUG | m6b | Created | -0.13 | -0.223 |
-0.59 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr10:g.121478893C>T | COSN1474325 | RK157_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3653 |
accagcgtCTTCTTAaaag |
16 |
CUAAGAAG | m7b | Created | -0.028000 | -0.122000 |
-0.040000 |
| hsa-miR-3658 |
accagcgtcTTCTTAAAag |
16 |
UUUAAGAA | m8a | (m7a->m8a) | -0.043000 | -0.068000 |
-0.010000 |
| hsa-miR-3916 |
accagcgTCCTCTTaaaag |
0 | AAGAGGAA | m7a | Disrupted | NA | NA | No effect |
| hsa-miR-5197-3p |
accagcgTCTTCTTaaaag |
0 | AAGAAGAG | m7a | Created | NA | NA | No effect |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr10:g.121479070G>T | COSN5279480 | RK095_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4775 |
ggggAAAATTAAgttttga |
0 | UUAAUUUU | m8a | Created | no TS | 0.129000 |
-0.880000 |
| hsa-miR-5696 |
ggggaAAATGAagttttga |
6 |
CUCAUUUA | m6b | Disrupted | 0.050000 | no TS | No effect |
| hsa-miR-590-3p |
ggggAAAATTAagttttga |
0 | UAAUUUUA | m7a | Created | no TS | 0.114000 |
-0.070000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr10:g.121479183G>T | cosmic_v64_1760521 | Leukemia/T-ALL | ||||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3117-5p |
atttaAGTGTCatttctat |
0 | AGACACUA | m6b | Created | no TS | -0.153 |
-3.01 |
| hsa-miR-425-5p |
atttaaGTGTCATTtctat |
0 | AAUGACAC | m8a | Created | no TS | -0.211 |
-0.71 |
| hsa-miR-4252 |
atttaAGTGGCatttctat |
0 | GGCCACUG | m6b | Disrupted | -0.17 | no TS |
6.97 |