SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_004113 |
---|---|
Gene Symbol: | FGF12 |
Description: | Homo sapiens fibroblast growth factor 12 (FGF12), transcript variant 2, mRNA. |
Gene Location: | chr3(-):191857181-192445388 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192139609G>C | COSN9541845 | AOCS-141-3-2 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3928 |
tttgtctTTCCTCCaagta |
0 | GGAGGAAC | m7a | Created | NA | NA |
-0.350000 |
|
hsa-miR-765 |
tttgtcttTCCTCCAagta |
0 | UGGAGGAG | m7a | Created | -0.051000 | -0.221000 | No effect | |
hsa-miR-766-5p |
tttgtctTTCCTCCaagta |
0 | AGGAGGAA | m7b | Created | -0.093000 | -0.434000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192139731C>T | COSN7842463 | 8067232 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2115-5p |
agtaacagaTGGAAGCaaa |
3 |
AGCUUCCA | m7b | (m6b->m7b) | -0.176000 | -0.409000 |
-2.470000 |
|
hsa-miR-340-3p |
agtaacAGACGGAagcaaa |
0 | UCCGUCUC | m7a | Disrupted | -0.224000 | no TS |
4.520000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192140055A>C | COSN6426371 | HX36T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-340-5p |
ccaCTTTATAAtaaaaaag |
11 |
UUAUAAAG | m8a | Disrupted | -0.011000 | -0.019000 | No effect | |
hsa-miR-4795-3p |
ccactttATAATAaaaaag |
2 |
AUAUUAUU | m6b | Disrupted | 0.472000 | 0.408000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192140152G>T | COSN1273938 | HX17T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3065-5p |
ttgaTTTGTTGtctttagt |
6 |
UCAACAAA | m7b | Created | 0.019000 | -0.034000 |
-0.200000 |
|
hsa-miR-3529-3p |
ttgatTTGTTGTctttagt |
8 |
AACAACAA | m7b | Created | -0.113000 | -0.216000 |
-0.750000 |
|
hsa-miR-3617 |
ttgatttgtTGTCTTTagt |
5 |
AAAGACAU | m7a | (m6a->m7a) | 0.057000 | 0.057000 |
-0.020000 |
|
hsa-miR-3667-5p |
ttgatttgtGGTCTTTagt |
4 |
AAAGACCC | m7a | (m7a->m6a) | -0.093000 | -0.093000 | No effect | |
hsa-miR-4719 |
ttgATTTGTGgtctttagt |
0 | UCACAAAU | m7b | (m7b->m6c) | -0.132000 | -0.076000 |
2.480000 |
|
hsa-miR-548ao-3p |
ttgatttgtGGTCTTTagt |
0 | AAAGACCG | m7a | (m7a->m6a) | NA | NA |
1.090000 |
|
hsa-miR-641 |
ttgatttgtTGTCTTTagt |
5 |
AAAGACAU | m7a | (m6a->m7a) | 0.057000 | 0.057000 |
-0.010000 |
|
hsa-miR-7-1-3p |
ttgATTTGTTGtctttagt |
1 |
CAACAAAU | m8a | Created | 0.442000 | 0.482000 |
-1.080000 |
|
hsa-miR-7-2-3p |
ttgATTTGTTGtctttagt |
1 |
CAACAAAU | m8a | Created | 0.451000 | 0.500000 |
-0.230000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192140221A>G | COSN1938617 | RK048_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-643 |
gttcTACAAGTatatatgt |
2 |
ACUUGUAU | m7a | Created | -0.190000 | -0.190000 | No effect | |
hsa-miR-643 |
gttcTACAAGTatatatgt |
2 |
ACUUGUAU | m7a | Created | -0.190000 | -0.190000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192140614C>T | COSN5042220 | HX24T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1286 |
gtaGTCCTGCggtgccact |
2 |
UGCAGGAC | m7b | (m7b->m6c) | -0.078000 | no TS | No effect | |
hsa-miR-140-3p |
gtagtcCTGTGGTgccact |
13 |
UACCACAG | m7b | Created | -0.129000 | -0.132000 |
-2.760000 |
|
hsa-miR-4700-3p |
gtaGTCCTGTGgtgccact |
0 | CACAGGAC | m8a | Created | no TS | -0.049000 |
-1.920000 |
|
hsa-miR-593-5p |
gtagtcctgTGGTGCCact |
4 |
AGGCACCA | m7b | (m6b->m7b) | -0.085000 | -0.173000 |
-1.230000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192140645C>T | COSN9541846 | AOCS-139-6-3 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-138-2-3p |
ataAAATAGCaacaatcta |
10 |
GCUAUUUC | m7a | (m7a->m6b) | 0.267000 | 0.267000 |
-0.060000 |
|
hsa-miR-744-3p |
ataaaataGCAACAatcta |
2 |
CUGUUGCC | m6b | Disrupted | -0.042000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192140864T>A | COSN6759694 | RK053_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3184-3p |
ttcaGAGACTTTtgtgctt |
0 | AAAGUCUC | m8a | Disrupted | 0.021000 | 0.015000 | No effect | |
hsa-miR-4719 |
ttcagagacATTTGTGctt |
0 | UCACAAAU | m7b | (m6b->m7b) | -0.132000 | 0.018000 | No effect | |
hsa-miR-593-3p |
ttCAGAGACAtttgtgctt |
0 | UGUCUCUG | m8a | (m7b->m8a) | -0.002000 | -0.002000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192141063G>A | COSN7842464 | 8033471 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4520a-5p |
attggctACGCAGatataa |
1 |
CCUGCGUG | m6b | Disrupted | -0.088000 | no TS |
2.240000 |
|
hsa-miR-4520b-5p |
attggctACGCAGatataa |
1 |
CCUGCGUG | m6b | Disrupted | -0.088000 | no TS |
2.240000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192141334A>G | COSN15138217 | LP6005500-DNA_D01 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3130-5p |
tattcACTGGGTttttaaa |
0 | UACCCAGU | m7b | Created | no TS | -0.102000 |
-0.020000 |
|
hsa-miR-4276 |
tatTCACTGAGtttttaaa |
9 |
CUCAGUGA | m8a | Disrupted | -0.204000 | -0.150000 |
0.070000 |
|
hsa-miR-4482-5p |
tattcACTGGGTTtttaaa |
0 | AACCCAGU | m8a | Created | no TS | -0.112000 |
-0.240000 |
|
hsa-miR-548aa |
tattcactgGGTTTTTaaa |
3 |
AAAAACCA | m7a | (m6a->m7a) | 0.069000 | 0.069000 | No effect | |
hsa-miR-548ac |
tattcactgGGTTTTTaaa |
0 | CAAAAACC | m7b | (m6b->m7b) | 0.222000 | 0.232000 |
-0.650000 |
|
hsa-miR-548ae |
tattcactgAGTTTTTaaa |
0 | CAAAAACU | m7b | (m7b->m6b) | 0.259000 | 0.197000 | No effect | |
hsa-miR-548ah-3p |
tattcactgAGTTTTTaaa |
0 | CAAAAACU | m7b | (m7b->m6b) | 0.259000 | 0.197000 |
0.020000 |
|
hsa-miR-548aj-3p |
tattcactgAGTTTTTAaa |
0 | UAAAAACU | m8a | (m8a->m7a) | 0.259000 | 0.197000 | No effect | |
hsa-miR-548am-3p |
tattcactgAGTTTTTaaa |
0 | CAAAAACU | m7b | (m7b->m6b) | 0.259000 | 0.197000 |
0.010000 |
|
hsa-miR-548ap-3p |
tattcactgGGTTTTTaaa |
3 |
AAAAACCA | m7a | (m6a->m7a) | 0.078000 | 0.078000 |
-0.010000 |
|
hsa-miR-548aq-3p |
tattcactgAGTTTTTaaa |
0 | CAAAAACU | m7b | (m7b->m6b) | 0.259000 | 0.197000 | No effect | |
hsa-miR-548as-3p |
tattcactGGGTTTTtaaa |
0 | UAAAACCC | m7b | Created | -0.010000 | -0.032000 |
-0.060000 |
|
hsa-miR-548d-3p |
tattcactgGGTTTTTaaa |
0 | CAAAAACC | m7b | (m6b->m7b) | 0.236000 | 0.252000 |
-0.180000 |
|
hsa-miR-548e |
tattcactgAGTTTTTaaa |
0 | AAAAACUG | m7a | (m7a->m6a) | NA | NA |
0.140000 |
|
hsa-miR-548f |
tattcactgAGTTTTTaaa |
0 | AAAAACUG | m7a | (m7a->m6a) | NA | NA | No effect | |
hsa-miR-548h-3p |
tattcactgGGTTTTTaaa |
0 | CAAAAACC | m7b | (m6b->m7b) | 0.222000 | 0.224000 |
-0.040000 |
|
hsa-miR-548t-3p |
tattcactgGGTTTTTaaa |
3 |
AAAAACCA | m7a | (m6a->m7a) | 0.069000 | 0.069000 | No effect | |
hsa-miR-548x-3p |
tattcactgAGTTTTTAaa |
0 | UAAAAACU | m8a | (m8a->m7a) | 0.259000 | 0.197000 | No effect | |
hsa-miR-548z |
tattcactgGGTTTTTaaa |
0 | CAAAAACC | m7b | (m6b->m7b) | 0.222000 | 0.224000 |
-0.040000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192141475G>T | COSN6426372 | HX36T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-146a-3p |
tttagTTCAGAGaattaat |
0 | CCUCUGAA | m7b | Disrupted | 0.098000 | 0.038000 |
0.010000 |
|
hsa-miR-301a-5p |
tttagtTCAGAGaattaat |
0 | GCUCUGAC | m6b | Disrupted | 0.030000 | 0.026000 | No effect | |
hsa-miR-3191-5p |
tttagttCAGAGAattaat |
0 | CUCUCUGG | m6b | Disrupted | 0.011000 | no TS |
0.060000 |
|
hsa-miR-3921 |
tttagtTCAGAGAattaat |
0 | UCUCUGAG | m7a | Disrupted | 0.050000 | 0.033000 | No effect | |
hsa-miR-4539 |
tttAGTTCAGagaattaat |
3 |
GCUGAACU | m7b | (m7b->m6c) | -0.147000 | -0.116000 |
5.010000 |
|
hsa-miR-4653-5p |
tttagtTCAGAGAattaat |
0 | UCUCUGAG | m7a | Disrupted | 0.050000 | 0.036000 |
0.010000 |
|
hsa-miR-5571-5p |
tttagttcaGAGAATTaat |
0 | CAAUUCUC | m7b | (m7b->m6b) | -0.070000 | -0.064000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192141771C>A | COSN1938618 | RK027_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3152-3p |
cataaaTAACACAattgat |
2 |
UGUGUUAG | m7a | Disrupted | 0.021000 | no TS |
0.230000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192141935A>G | COSN14466764 | 8068554 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-129-5p |
aacCAAAAAGaaaaagaaa |
1 |
CUUUUUGC | m7a | (m6b->m7a) | 0.424000 | 0.285000 |
0.140000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192142030C>T | COSN1938619 | RK002_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-630 |
aaaAGAATACccctggggc |
4 |
AGUAUUCU | m7b | (m7b->m6c) | 0.037000 | -0.037000 |
0.200000 |
|
hsa-miR-630 |
aaaAGAATACccctggggc |
4 |
AGUAUUCU | m7b | (m7b->m6c) | 0.037000 | -0.037000 |
0.200000 |
|
hsa-miR-630 |
aaaAGAATACccctggggc |
0 | AGUAUUCU | m7b | (m7b->m6c) | 0.037 | -0.037 |
0.2 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192142239G>C | COSN9717565 | C0065T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4299 |
cctTCACCAGgtatcctat |
0 | GCUGGUGA | m7b | (m7b->m6c) | -0.025000 | no TS | No effect | |
hsa-miR-619 |
ccttcaCCAGGTatcctat |
0 | GACCUGGA | m6b | Disrupted | -0.097000 | -0.069000 |
0.190000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192143460T>C | COSN5531409 | RK038_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-302c-5p |
tataaactATGTTAAtacc |
0 | UUUAACAU | m7b | Disrupted | 0.158000 | 0.226000 |
0.010000 |
|
hsa-miR-3143 |
tataaactATGTTAatacc |
0 | AUAACAUU | m6b | Disrupted | 0.268000 | 0.263000 | No effect | |
hsa-miR-376c |
tataaaCTATGTTaatacc |
1 |
AACAUAGA | m7a | Disrupted | -0.016000 | -0.016000 |
0.510000 |
|
hsa-miR-4803 |
tataaacTATGTTAatacc |
0 | UAACAUAA | m7a | Disrupted | 0.146000 | 0.174000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192143484T>G | COSN8923109 | SS6003317 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192143720G>A | COSN9541847 | AOCS-116-1-3 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-338-5p |
aactgTATTGTTattagta |
0 | AACAAUAU | m7a | Disrupted | 0.038000 | 0.038000 |
0.090000 |
|
hsa-miR-369-3p |
aactGTATTATTattagta |
8 |
AAUAAUAC | m8a | Created | 0.215000 | 0.075000 |
0.060000 |
|
hsa-miR-374c-5p |
aacTGTATTATtattagta |
4 |
AUAAUACA | m8a | Created | 0.122000 | -0.011000 |
0.010000 |
|
hsa-miR-5692b |
aactgtatTATTATTagta |
8 |
AAUAAUAU | m7a | Created | 0.271000 | 0.271000 |
-0.020000 |
|
hsa-miR-5692c |
aactgtatTATTATTagta |
8 |
AAUAAUAU | m7a | Created | 0.271000 | 0.271000 |
-0.010000 |
|
hsa-miR-655 |
aacTGTATTATtattagta |
4 |
AUAAUACA | m8a | Created | 0.125000 | -0.026000 |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192143887T>A | COSN15510191 | AOCS-135-8-X | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-449b-3p |
aagacctaGTGGCTaagat |
2 |
CAGCCACA | m6b | Disrupted | -0.211000 | -0.038000 |
0.030000 |
|
hsa-miR-449b-3p |
aagacctaGTGGCTaagat |
2 |
CAGCCACA | m6b | Disrupted | -0.211000 | -0.038000 |
0.030000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192143888G>T | COSN15500491 | AOCS-135-8-X | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-449b-3p |
caagacctaGTGGCTaaga |
2 |
CAGCCACA | m6b | Disrupted | -0.211000 | -0.038000 |
0.030000 |
|
hsa-miR-4662a-5p |
caagacctaTTGGCTAAga |
3 |
UUAGCCAA | m8a | (m7a->m8a) | -0.173000 | -0.383000 |
-0.110000 |
|
hsa-miR-449b-3p |
caagacctaGTGGCTaaga |
2 |
CAGCCACA | m6b | Disrupted | -0.211000 | -0.038000 |
0.030000 |
|
hsa-miR-4662a-5p |
caagacctaTTGGCTAAga |
3 |
UUAGCCAA | m8a | (m7a->m8a) | -0.173000 | -0.383000 |
-0.110000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192143939T>A | COSN1938620 | RK010_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1243 |
ccatttcctTCCAGTaaat |
3 |
AACUGGAU | m6b | Disrupted | -0.148000 | no TS |
0.700000 |
|
hsa-miR-1252 |
ccatTTCCTTCcagtaaat |
8 |
AGAAGGAA | m7b | Disrupted | -0.270000 | -0.111000 |
0.020000 |
|
hsa-miR-3654 |
ccatttcctTCCAGTaaat |
3 |
GACUGGAC | m6b | Disrupted | -0.304000 | -0.153000 |
0.780000 |
|
hsa-miR-4533 |
ccattTCCTTCCAgtaaat |
8 |
UGGAAGGA | m8a | Disrupted | -0.519000 | -0.152000 |
0.420000 |
|
hsa-miR-1243 |
ccatttcctTCCAGTaaat |
3 |
AACUGGAU | m6b | Disrupted | -0.148000 | no TS |
0.700000 |
|
hsa-miR-1252 |
ccatTTCCTTCcagtaaat |
8 |
AGAAGGAA | m7b | Disrupted | -0.270000 | -0.111000 |
0.020000 |
|
hsa-miR-3654 |
ccatttcctTCCAGTaaat |
3 |
GACUGGAC | m6b | Disrupted | -0.304000 | -0.153000 |
0.780000 |
|
hsa-miR-4533 |
ccattTCCTTCCAgtaaat |
8 |
UGGAAGGA | m8a | Disrupted | -0.519000 | -0.152000 |
0.420000 |
|
hsa-miR-1243 |
ccatttcctTCCAGTaaat |
0 | AACUGGAU | m6b | Disrupted | -0.148 | no TS |
0.7 |
|
hsa-miR-1252 |
ccatTTCCTTCcagtaaat |
0 | AGAAGGAA | m7b | Disrupted | -0.27 | -0.111 |
0.02 |
|
hsa-miR-3654 |
ccatttcctTCCAGTaaat |
0 | GACUGGAC | m6b | Disrupted | -0.304 | -0.153 |
0.78 |
|
hsa-miR-4533 |
ccattTCCTTCCAgtaaat |
0 | UGGAAGGA | m8a | Disrupted | -0.519 | -0.152 |
0.42 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.192143973T>C | COSN1938621 | RK170_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-149-3p |
ctcatCCCTCCCccttccc |
0 | AGGGAGGG | m7b | Created | no TS | -0.229000 |
-2.000000 |
|
hsa-miR-3202 |
ctcatCCCTTCCccttccc |
11 |
UGGAAGGG | m7b | Disrupted | -0.761000 | -0.515000 |
3.390000 |
|
hsa-miR-4271 |
ctcatccCTTCCCCttccc |
2 |
GGGGGAAG | m7b | Disrupted | -0.165000 | no TS |
0.240000 |
|
hsa-miR-4716-3p |
ctcatcccTCCCCCTTccc |
2 |
AAGGGGGA | m8a | Created | -0.282000 | -0.474000 |
0.220000 |
|
hsa-miR-4723-5p |
ctcatccCTCCCCCttccc |
0 | UGGGGGAG | m7b | Created | no TS | -0.289000 |
-2.970000 |
|
hsa-miR-4725-3p |
ctcatccCTTCCCCttccc |
2 |
UGGGGAAG | m7b | Disrupted | -0.174000 | no TS |
3.420000 |
|
hsa-miR-4728-5p |
ctcatCCCTCCCccttccc |
0 | UGGGAGGG | m7b | Created | no TS | -0.248000 |
-1.450000 |
|
hsa-miR-4747-5p |
ctcatcCCTTCCCcttccc |
4 |
AGGGAAGG | m7b | Disrupted | -0.861000 | -0.678000 |
0.010000 |
|
hsa-miR-5196-5p |
ctcatcCCTTCCCcttccc |
4 |
AGGGAAGG | m7b | Disrupted | -0.968000 | -0.757000 |
-0.900000 |
|
hsa-miR-5698 |
ctcatccCTCCCCCttccc |
0 | UGGGGGAG | m7b | Created | no TS | -0.252000 |
-1.820000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.192143991C>A | COSN6759695 | RK308_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3154 |
tctcCCCTTCTtccctctc |
4 |
CAGAAGGG | m7b | Disrupted | 0.000000 | no TS |
-0.140000 |
hsa-miR-3179 |
tctCCCCTTCTtccctctc |
2 |
AGAAGGGG | m8a | Disrupted | 0.000000 | -0.214000 |
-0.030000 |
hsa-miR-3185 |
tctcccCTTCTTCcctctc |
8 |
AGAAGAAG | m7b | Disrupted | 0.066000 | 0.080000 |
-0.060000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
192139724 | rs79161357 | A | A |
hsa-miR-129-5p hsa-miR-2115-5p hsa-miR-3977 hsa-miR-516a-3p hsa-miR-516b-3p hsa-miR-6885-3p hsa-miR-7162-5p |
1 3 9 3 3 6 3 |
ggaaGCAAAAAAa GGAAGCAaaaaaa gGAAGCAAaaaaa GGAAGCAaaaaaa GGAAGCAaaaaaa ggAAGCAAAAaaa GGAAGCAaaaaaa |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N |
-0.217 -0.176 -0.132 -0.166 -0.166 -0.147 -0.17 |
C |
hsa-miR-6815-3p |
9 |
gGAAGCCAaaaaa |
Created |
N |
-0.162 |
|||
192139725 | rs77908516 | C | C |
hsa-miR-129-5p hsa-miR-2115-5p hsa-miR-3977 hsa-miR-516a-3p hsa-miR-516b-3p hsa-miR-6885-3p hsa-miR-7162-5p |
1 3 9 3 3 6 3 |
cggaaGCAAAAAA cGGAAGCAaaaaa cgGAAGCAAaaaa cGGAAGCAaaaaa cGGAAGCAaaaaa cggAAGCAAAAaa cGGAAGCAaaaaa |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N |
-0.186 -0.176 -0.132 -0.166 -0.166 -0.147 -0.17 |
A |
hsa-miR-4659a-3p hsa-miR-4659b-3p hsa-miR-6875-3p |
9 9 3 |
cgGAAGAAAaaaa cgGAAGAAAaaaa cGGAAGAAAaaaa |
Created Created Created |
N N N |
-0.046 -0.046 -0.258 |
|||
192139904 | rs1968977 | A | T |
hsa-miR-302c-5p hsa-miR-3143 |
0 |
ttcATGTTAAgtc ttcATGTTAAgtc |
Created Created |
N N |
-0.018 0.001 |
A |
hsa-miR-2681-3p hsa-miR-7154-5p hsa-miR-8060 hsa-miR-96-3p |
0 |
ttCATGATAagtc TTCATGAtaagtc TTCATGAtaagtc ttCATGATAagtc |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
-0.082 -0.141 -0.051 -0.073 |
|||
192140176 | rs181779233 | T | T |
hsa-miR-1277-5p hsa-miR-369-3p hsa-miR-374a-5p hsa-miR-374b-5p hsa-miR-5692b hsa-miR-5692c |
8 8 8 8 8 8 |
ATATATTAtatga ataTATTATAtga ataTATTATAtga ataTATTATAtga atATATTATAtga atATATTATAtga |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N |
0.081 0.061 -0.009 -0.009 0.029 0.029 |
C |
hsa-miR-5007-3p |
10 |
atatatCATATGA |
Created |
N |
-0.107 |
|||
192140177 | rs185285446 | T | T |
hsa-miR-1277-5p hsa-miR-369-3p hsa-miR-374a-5p hsa-miR-374b-5p hsa-miR-5692b hsa-miR-5692c |
8 8 8 8 8 8 |
gATATATTAtatg gataTATTATAtg gataTATTATAtg gataTATTATAtg gatATATTATAtg gatATATTATAtg |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N |
0.081 0.061 -0.009 -0.009 0.029 0.029 |
A |
hsa-miR-6083 hsa-miR-656-3p |
10 8 |
GATATAAtatatg gatATAATATAtg |
Created Created |
N N |
0.008 0.037 |
|||
192141196 | rs1237554 | C | C |
hsa-miR-3667-5p hsa-miR-4709-3p |
4 3 |
ctGGGTCTTcaat ctgggTCTTCAAt |
Disrupted Disrupted |
N N |
-0.093 0.069 |
T |
hsa-miR-548as-3p hsa-miR-570-3p |
4 3 |
ctGGGTTTTcaat ctggGTTTTCAat |
Created Created |
N N |
0.011 0.117 |
|||
192141234 | rs11360410 | - | T |
hsa-miR-126-5p hsa-miR-4795-3p |
4 2 |
caagtaTAATAAT caagtATAATAAt |
Unknown Unknown |
N N |
0.113 0.158 |
- |
hsa-miR-4699-3p |
2 |
caAGTAAATAat |
Unknown |
N |
0.123 |
|||
192141334 | rs183573703 | A | A |
hsa-miR-4276 hsa-miR-5190 hsa-miR-548ae hsa-miR-548ah-3p hsa-miR-548aj-3p hsa-miR-548am-3p hsa-miR-548aq-3p hsa-miR-548j-3p hsa-miR-548x-3p |
2 2 2 2 2 2 2 2 2 |
TCACTGAgttttt TCACTGAgttttt tcactgAGTTTTT tcactgAGTTTTT tcactgAGTTTTT tcactgAGTTTTT tcactgAGTTTTT tcactgAGTTTTT tcactgAGTTTTT |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N |
-0.054 -0.007 0.062 0.062 0.062 0.062 0.062 0.062 0.062 |
192141550 | rs190746934 | G | G |
hsa-miR-369-3p hsa-miR-6082 |
2 1 |
ttctccGTATTAT ttctcCGTATTAt |
Disrupted Disrupted |
N N |
0.154 -0.01 |
A |
hsa-miR-4434 hsa-miR-4516 hsa-miR-4517 hsa-miR-4531 hsa-miR-4802-5p hsa-miR-5583-3p hsa-miR-5692b hsa-miR-5692c hsa-miR-5703 hsa-miR-6514-5p hsa-miR-8076 |
1 1 1 1 1 1 2 2 1 1 1 |
TTCTCCAtattat TTCTCCAtattat ttctcCATATTAt TTCTCCAtattat ttCTCCATAttat ttctCCATATTAt ttctccATATTAT ttctccATATTAT TTCTCCAtattat ttCTCCATAttat ttcTCCATATtat |
Created Created Created Created Created Created Created Created Created Created Created |
N N N N N N N N N N N |
0.004 0.018 0.099 -0.033 -0.022 0.078 0.197 0.197 0.004 -0.022 -0.015 |
|||
192141936 | rs77501713 | A | A |
hsa-miR-129-5p |
4 |
cCAAAAAAaaaaa |
Disrupted |
N |
0.139 |
192142022 | rs187953375 | G | G |
hsa-miR-129-5p hsa-miR-3189-5p hsa-miR-4758-3p hsa-miR-5699-5p |
21 2 2 2 |
cctgggGCAAAAA ccTGGGGCAaaaa ccTGGGGCAaaaa ccTGGGGCAaaaa |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
0.141 -0.08 -0.07 -0.077 |
A |
hsa-miR-1915-3p hsa-miR-2355-3p hsa-miR-4433-5p hsa-miR-4433b-5p hsa-miR-4646-3p hsa-miR-4726-3p hsa-miR-6764-5p hsa-miR-6840-3p |
0 |
CCTGGGAcaaaaa cctgGGACAAAaa ccTGGGACAaaaa ccTGGGACAAaaa cctGGGACAAAaa CCTGGGAcaaaaa CCTGGGAcaaaaa CCTGGGAcaaaaa |
Created Created Created Created Created Created Created Created |
N N N N N N N N |
-0.061 0.003 -0.044 -0.059 -0.099 -0.048 -0.066 -0.024 |
|||
192142398 | rs139892590 | G | |||||||
A |
hsa-miR-1277-5p hsa-miR-338-5p hsa-miR-4728-3p |
10 9 14 |
cagcATATATTgt cagcatATATTGT CAGCATAtattgt |
Created Created Created |
N N N |
0.247 0.089 0.007 |
|||
192143854 | rs35806660 | - | - |
hsa-miR-155-3p hsa-miR-4731-3p hsa-miR-4801 |
15 12 12 |
cctttgTGTAGGA cctTTGTGTAgga cctTTGTGTAgga |
Unknown Unknown Unknown |
N N N |
0.034 -0.035 -0.039 |
T |
hsa-miR-3065-5p hsa-miR-3529-3p |
12 12 |
ccTTTGTTGtagga cctTTGTTGTAgga |
Unknown Unknown |
N N |
-0.065 -0.174 |