SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001184867
Gene Symbol: FCRLA
Description: Homo sapiens Fc receptor-like A (FCRLA), transcript variant 1, mRNA.
Gene Location: chr1(+):161676761-161684142
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.161713553T>A COSN1091069 HCC122T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-216b gaattAGAGATTagctata
 0 AAAUCUCU m7b Created no TS -0.309000 -4.760000
hsa-miR-3675-3p gaatTAGAGATtagctata
 0 CAUCUCUA m7b Created no TS -0.232000 -0.520000
hsa-miR-618 gaatTAGAGTTTagctata
 1
 AAACUCUA m8a Disrupted -0.226000 no TS 5.430000
hsa-miR-216b gaattAGAGATTagctata
 0 AAAUCUCU m7b Created no TS -0.309000 -4.760000
hsa-miR-3675-3p gaatTAGAGATtagctata
 0 CAUCUCUA m7b Created no TS -0.232000 -0.520000
hsa-miR-618 gaatTAGAGTTTagctata
 1
 AAACUCUA m8a Disrupted -0.226000 no TS 5.430000
hsa-miR-216b gaattAGAGATTagctata
 0 AAAUCUCU m7b Created no TS -0.309 -4.76
hsa-miR-3675-3p gaatTAGAGATtagctata
 0 CAUCUCUA m7b Created no TS -0.232 -0.52
hsa-miR-618 gaatTAGAGTTTagctata
 1
 AAACUCUA m8a Disrupted -0.226 no TS 5.43

Mutation Mutation ID Sample Name Cancer Type
chr1:g.161713827C>A COSN1409444 RK159_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1265 gccgctaaACATCCTataa
 3
 CAGGAUGU m7b Disrupted -0.271000 no TS -4.720000
hsa-miR-1290 gccgctaAAAATCCtataa
 0 UGGAUUUU m7b Created no TS -0.066000 No effect
hsa-miR-3167 gccgctaaAAATCCTataa
 3
 AGGAUUUC m7a Created -0.196000 -0.196000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr1:g.161714018G>A COSN6005389 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1226-3p cagtctttaGCTGGTGcta
 1
 UCACCAGC m7b (m7b->m6c) -0.245000 no TS No effect
hsa-miR-4744 cagTCTTTAGctggtgcta
 2
 UCUAAAGA m7b (m7b->m6b) -0.143000 -0.127000 -1.470000

Mutation Mutation ID Sample Name Cancer Type
chr1:g.161714173T>C COSN8321116 PCSI_0084_Pa_P_526 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3121-3p ttagtgcccCTATTTAaaa
 0 UAAAUAGA m7a (m6b->m7a) no TS 0.025000 No effect
hsa-miR-4688 ttagTGCCCCTAtttaaaa
 0 UAGGGGCA m8a Created no TS -0.455000 -1.570000
hsa-miR-5692a ttagtgcccTTATTTaaaa
 2
 CAAAUAAU m6b Disrupted 0.104000 no TS No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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