SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_203301
Gene Symbol:	FBXO33
Description:	Homo sapiens F-box protein 33 (FBXO33), mRNA.
Gene Location:	chr14(-):39865576-39901704
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr14:g.39396428A>G			COSN1167559		HX10T		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-1238	tttGAGGAAGaatactgaa	4	CUUCCUCG	m7a	(m6b->m7a)	-0.180000	no TS	0.630000
hsa-miR-630	tttgaggaAGAATACTgaa	0	AGUAUUCU	m8a	Created	-0.063000	-0.250000	-0.060000

Mutation			Mutation ID		Sample Name		Cancer Type
chr14:g.39396780T>A			cosmic_v64_1732904				Medulloblastoma
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-4477a	catagCTTAATAaactata	0	CUAUUAAG	m7b	Created	no TS	-0.126	-0.08

Mutation			Mutation ID		Sample Name		Cancer Type
chr14:g.39399365A>G			COSN15008807		LP6005409-DNA_A02		[oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-502-5p	cttgatCAAGGAacgtagt	0	AUCCUUGC	m6b	Created	no TS	-0.110000	No effect

Mutation			Mutation ID		Sample Name		Cancer Type
chr14:g.39399452->T			ICGC_ssm_v3_1173		BN02T		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-4724-5p	gtttttttTTCAGTagtgt	0	AACUGAAC	m6b	Disrupted	-0.093000	-0.094000	-0.890000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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