SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000043 |
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Gene Symbol: | FAS |
Description: | Homo sapiens Fas (TNF receptor superfamily, member 6) (FAS), transcript variant 1, mRNA. |
Gene Location: | chr10(+):90750287-90775542 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr10:g.89014550A>G | COSN5888337 | RK190_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3163 |
actgggtacATTTTATcat |
0 | UAUAAAAU | m7b | (m7b->m6c) | -0.009000 | no TS |
0.020000 |
|
hsa-miR-3662 |
actgggtaCATTTTatcat |
5 |
GAAAAUGA | m6b | Disrupted | 0.118000 | 0.094000 |
0.290000 |
|
hsa-miR-424-3p |
actgggtACGTTTTatcat |
0 | CAAAACGU | m7b | Created | no TS | -0.268000 |
-0.100000 |
|
hsa-miR-548ad |
actgggtaCGTTTTatcat |
0 | GAAAACGA | m6b | Created | no TS | -0.089000 |
1.000000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr10:g.89014996A>G | COSN1124101 | HX17T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-302a-5p |
agaaTTTAAGTaaggctct |
2 |
ACUUAAAC | m7a | Created | -0.041000 | -0.041000 | No effect | |
hsa-miR-302a-5p |
agaaTTTAAGTaaggctct |
0 | ACUUAAAC | m7a | Created | -0.041 | -0.041 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.89015535C>A | COSN7074141 | 8013946 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1275 |
tcataCCCCCAagtttcta |
1 |
GUGGGGGA | m6b | Disrupted | -0.573000 | -0.377000 |
0.010000 |
hsa-miR-3170 |
tcatACCCCAaagtttcta |
2 |
CUGGGGUU | m6b | Created | -0.173000 | -0.371000 | No effect |
hsa-miR-4665-5p |
tcataCCCCCAagtttcta |
1 |
CUGGGGGA | m6b | Disrupted | -0.611000 | -0.398000 | No effect |
hsa-miR-5572 |
tcatACCCCAAagtttcta |
3 |
GUUGGGGU | m7b | Created | -0.115000 | -0.492000 | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
89015534 | rs1468063 | C | C |
hsa-miR-1275 hsa-miR-4665-5p hsa-miR-6751-5p hsa-miR-6752-5p hsa-miR-6803-5p hsa-miR-6835-5p hsa-miR-6842-5p hsa-miR-7109-5p hsa-miR-7110-5p |
1 1 0 0 0 0 0 1 0 |
ataCCCCCAAgtt ataCCCCCAAgtt atACCCCCAAgtt atACCCCCAagtt atACCCCCAAgtt aTACCCCCAagtt atACCCCCAagtt ataCCCCCAAgtt atACCCCCAagtt |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N |
-0.196 -0.213 -0.452 -0.217 -0.452 -0.486 -0.22 -0.218 -0.227 |
T |
hsa-miR-1226-5p hsa-miR-6734-5p hsa-miR-6804-5p hsa-miR-6834-5p |
1 1 0 1 |
ataCCCTCAAgtt ataCCCTCAAgtt atACCCTCAagtt ataCCCTCAAgtt |
Created Created Created Created |
N N N N |
-0.178 -0.178 -0.177 -0.174 |