SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000137 |
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Gene Symbol: | FAH |
Description: | Homo sapiens fumarylacetoacetate hydrolase (fumarylacetoacetase) (FAH), mRNA. |
Gene Location: | chr15(+):80445232-80478924 |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr15:g.80186258C>- | ICGC_ssm_v3_77576 | HCC139T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-296-3p |
ccctttCAACCCTgtgact |
0 | GAGGGUUG | m7b | Disrupted | -0.211000 | no TS |
1.800000 |
|
hsa-miR-513a-5p |
ccctttcaaCCTGTGAct |
0 | UUCACAGG | m7b | (m6c->m7b) | -0.114000 | -0.149000 |
2.100000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr15:g.80186347G>A | COSN1685525 | RK065_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-34a-5p |
tgCACTGCCAcagatgcag |
0 | UGGCAGUG | m8a | (m7a->m8a) | -0.144000 | -0.342000 |
0.130000 |
hsa-miR-3688-5p |
tgcacTGCCACagatgcag |
0 | AGUGGCAA | m6b | Created | no TS | -0.145000 |
-0.700000 |
hsa-miR-449a |
tgCACTGCCAcagatgcag |
0 | UGGCAGUG | m8a | (m7a->m8a) | -0.135000 | -0.332000 |
0.130000 |
hsa-miR-4734 |
tgcactgCCGCAGatgcag |
0 | GCUGCGGG | m6b | Disrupted | -0.215000 | no TS |
1.650000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
80186258 | rs200464452 | - | C |
hsa-miR-296-3p hsa-miR-6823-5p |
2 2 |
tttCAACCCTgtg tttcAACCCTGtg |
Unknown Unknown |
N N |
-0.211 -0.197 |
- |