SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000082
Gene Symbol: ERCC8
Description: Homo sapiens excision repair cross-complementing rodent repair deficiency, complementation group 8 (ERCC8), transcript variant 1, mRNA.
Gene Location: chr5(-):60169658-60240905
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr5:g.60874510T>C COSN14735452 CHC205T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5591-3p ccctaaatgTGGGTAatat
2
AUACCCAU m6b Disrupted -0.218000 no TS 5.400000
hsa-miR-5591-3p ccctaaatgTGGGTAatat
2
AUACCCAU m6b Disrupted -0.218000 no TS 5.400000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
60874510 rs3117 T T hsa-miR-5591-3p
5
taaatgTGGGTAA
Disrupted
N
-0.218

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