SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000082 |
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Gene Symbol: | ERCC8 |
Description: | Homo sapiens excision repair cross-complementing rodent repair deficiency, complementation group 8 (ERCC8), transcript variant 1, mRNA. |
Gene Location: | chr5(-):60169658-60240905 |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
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chr5:g.60874510T>C | COSN14735452 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-5591-3p |
ccctaaatgTGGGTAatat |
2 |
AUACCCAU | m6b | Disrupted | -0.218000 | no TS |
5.400000 |
hsa-miR-5591-3p |
ccctaaatgTGGGTAatat |
2 |
AUACCCAU | m6b | Disrupted | -0.218000 | no TS |
5.400000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
60874510 | rs3117 | T | T |
hsa-miR-5591-3p |
5 |
taaatgTGGGTAA |
Disrupted |
N |
-0.218 |