SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_016442
Gene Symbol: ERAP1
Description: Homo sapiens endoplasmic reticulum aminopeptidase 1 (ERAP1), transcript variant 2, mRNA.
Gene Location: chr5(-):96096513-96143892
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.96761337T>G COSN5162920 PD3905a [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3646 taaaTTCATTTTtagttat
 5
 AAAAUGAA m8a Disrupted 0.060000 0.123000 No effect
hsa-miR-3662 taaatTCATTTTtagttat
 1
 GAAAAUGA m7b Disrupted -0.085000 no TS No effect
hsa-miR-548c-3p taaattcATTTTTagttat
 5
 CAAAAAUC m6b Disrupted 0.160000 0.066000 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr5:g.96761985T>G COSN6715720 RK121_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4666a-5p gttgtACATGTAggttatt
 6
 AUACAUGU m7b Created -0.072000 -0.060000 -2.860000
hsa-miR-5009-3p gttgtacATTTAGGttatt
 5
 UCCUAAAU m7b Disrupted 0.004000 no TS 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr5:g.96762201T>C COSN4950572 SS6003323 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4703-3p acttAACTACAactcttaa
 0 UGUAGUUG m7a Created no TS -0.023000 -4.090000

Mutation Mutation ID Sample Name Cancer Type
chr5:g.96762205A>C COSN1321358 HCC102T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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