SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001206482
Gene Symbol: ELMO1
Description: Homo sapiens engulfment and cell motility 1 (ELMO1), transcript variant 3, mRNA.
Gene Location: chr7(-):36892510-37393272
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.36853044T>G COSN8800357 SS6003115 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-196a-3p catctccTGTTGCCtgcag
 4
 CGGCAACA m7b Disrupted -0.335000 -0.203000 1.180000
hsa-miR-4269 catctcctgGTGCCTGCag
 0 GCAGGCAC m8a (m7a->m8a) no TS -0.164000 0.300000
hsa-miR-4733-3p catctCCTGGTGcctgcag
 0 CCACCAGG m7b Created no TS -0.199000 -4.710000
hsa-miR-4742-5p catctcctgTTGCCTGcag
 3
 UCAGGCAA m7b (m7b->m6b) -0.142000 no TS 0.520000
hsa-miR-4768-3p caTCTCCTGGtgcctgcag
 2
 CCAGGAGA m8a (m7b->m8a) -0.168000 -0.141000 0.100000
hsa-miR-593-5p catctccTGGTGCCTgcag
 0 AGGCACCA m8a Created no TS -0.181000 -5.690000
hsa-miR-665 catCTCCTGGTgcctgcag
 7
 ACCAGGAG m8a Created -0.095000 -0.302000 -0.010000

Mutation Mutation ID Sample Name Cancer Type
chr7:g.36853408C>A COSN9987188 AOCS-163-1-4 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1246 agatccAATCCATgaaaaa
 2
 AAUGGAUU m7b Disrupted -0.066000 no TS -0.030000
hsa-miR-490-5p agatccaATCCATGaaaaa
 3
 CCAUGGAU m7b Disrupted -0.258000 no TS 0.220000

Mutation Mutation ID Sample Name Cancer Type
chr7:g.36853843A>C COSN14550953 8066081 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3142 actggAGGCCTTatcagga
 0 AAGGCCUU m7a Created NA NA -1.970000
hsa-miR-3161 actggaggcCTTATCAGga
 0 CUGAUAAG m8a (m7a->m8a) no TS 0.072000 -0.350000
hsa-miR-4753-5p actggaGGCCTTatcagga
 0 CAAGGCCA m6b Created no TS -0.059000 -0.010000
hsa-miR-3142 actggAGGCCTTatcagga
 0 AAGGCCUU m7a Created NA NA -1.970000
hsa-miR-3161 actggaggcCTTATCAGga
 0 CUGAUAAG m8a (m7a->m8a) no TS 0.072000 -0.350000
hsa-miR-4753-5p actggaGGCCTTatcagga
 0 CAAGGCCA m6b Created no TS -0.059000 -0.010000
hsa-miR-3142 actggAGGCCTTatcagga
 0 AAGGCCUU m7a Created NA NA -1.970000
hsa-miR-3161 actggaggcCTTATCAGga
 0 CUGAUAAG m8a (m7a->m8a) no TS 0.072000 -0.350000
hsa-miR-4753-5p actggaGGCCTTatcagga
 0 CAAGGCCA m6b Created no TS -0.059000 -0.010000
hsa-miR-3142 actggAGGCCTTatcagga
 0 AAGGCCUU m7a Created NA NA -1.970000
hsa-miR-3161 actggaggcCTTATCAGga
 0 CUGAUAAG m8a (m7a->m8a) no TS 0.072000 -0.350000
hsa-miR-4753-5p actggaGGCCTTatcagga
 0 CAAGGCCA m6b Created no TS -0.059000 -0.010000

Mutation Mutation ID Sample Name Cancer Type
chr7:g.36854707C>T COSN7979373 8066491 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-455-3p cctctaggaTGGACTGttg
 0 GCAGUCCA m7b (m6b->m7b) no TS -0.131000 -0.850000

Mutation Mutation ID Sample Name Cancer Type
chr7:g.36854818A>C COSN8800358 SS6003317 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-148b-5p caggcCAGAACTgccttct
 3
 AAGUUCUG m7b Disrupted -0.029000 -0.090000 No effect
hsa-miR-2682-5p caggccagaACTGCCTtct
 2
 CAGGCAGU m7b (m7b->m6b) -0.097000 no TS No effect
hsa-miR-34b-5p caggccagaACTGCCTtct
 2
 UAGGCAGU m7b (m7b->m6b) -0.088000 no TS No effect
hsa-miR-4277 caggccAGAACTGCcttct
 2
 GCAGUUCU m8a Disrupted 0.058000 no TS No effect
hsa-miR-449c-5p caggccagaACTGCCTtct
 2
 UAGGCAGU m7b (m7b->m6b) -0.097000 no TS No effect
hsa-miR-4736 caggccagACCTGCCTtct
 0 AGGCAGGU m8a Created no TS -0.131000 -0.030000
hsa-miR-548au-3p caggccagAACTGCCttct
 2
 UGGCAGUU m7b Disrupted -0.197000 -0.139000 No effect
hsa-miR-940 caggccagaCCTGCCTTct
 0 AAGGCAGG m8a (m7a->m8a) no TS -0.096000 0.140000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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