SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_004433
Gene Symbol: ELF3
Description: Homo sapiens E74-like factor 3 (ets domain transcription factor, epithelial-specific ) (ELF3), transcript variant 2, mRNA.
Gene Location: chr1(+):201979689-201986315
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.202015368C>T COSN520936 TCGA-AR-A0TX-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3166 cactcgagGTCTGCaaacc
 0 CGCAGACA m6b Created no TS -0.138000 -0.240000
hsa-miR-3678-3p cactcgaggTCTGCAaacc
 0 CUGCAGAG m6b Created no TS -0.087000 -0.760000
hsa-miR-4650-5p cactcgAGGCCTGcaaacc
 1
 UCAGGCCU m7b Disrupted -0.232000 -0.074000 No effect
hsa-miR-4771 cactcgagGTCTGCaaacc
 0 AGCAGACU m6b Created no TS -0.151000 -0.020000


Mutation Mutation ID Sample Name Cancer Type
chr1:g.202015451G>A COSN1079782 TCGA-B5-A11R-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr1:g.202015945T>G COSN5363604 RK038_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-28-5p gctcccAGCTCCTTtctcc
 1
 AAGGAGCU m8a Disrupted -0.066000 no TS 2.970000
hsa-miR-3139 gctcccAGCTCCTttctcc
 1
 UAGGAGCU m7b Disrupted -0.075000 no TS No effect
hsa-miR-4484 gctcccagCGCCTTTctcc
 0 AAAAGGCG m7b Created no TS -0.098000 -4.940000
hsa-miR-4487 gctcCCAGCTCctttctcc
 1
 AGAGCUGG m7b Disrupted -0.075000 no TS 0.080000
hsa-miR-524-3p gctcccaGCGCCTTtctcc
 0 GAAGGCGC m7b Created no TS -0.187000 -0.130000
hsa-miR-525-3p gctcccaGCGCCTTtctcc
 0 GAAGGCGC m7b Created no TS -0.187000 0.070000
hsa-miR-708-5p gctcccAGCTCCTTtctcc
 1
 AAGGAGCU m8a Disrupted -0.066000 no TS 0.020000


Mutation Mutation ID Sample Name Cancer Type
chr1:g.202016119G>T COSN7198255 8012347 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr1:g.202016405T>C COSN7198256 8061105 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3194-5p ttgcatGGCTGGCCttgtg
 1
 GGCCAGCC m8a Disrupted -0.203000 no TS 0.050000
hsa-miR-4753-5p ttgcatggcTGGCCTTGtg
 4
 CAAGGCCA m8a (m8a->m7b) -0.058000 no TS -0.080000

Mutation Mutation ID Sample Name Cancer Type
chr1:g.202016922G>A COSN6019157 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-371b-3p ggtgtGGGCACTTctaacc
 0 AAGUGCCC m8a Created no TS -0.274000 -0.590000
hsa-miR-4795-5p ggtgtgggCACTTCTaacc
 0 AGAAGUGG m7a Created NA NA -0.430000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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