SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_018479 |
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Gene Symbol: | ECHDC1 |
Description: | Homo sapiens enoyl CoA hydratase domain containing 1 (ECHDC1), transcript variant 1, mRNA. |
Gene Location: | chr6(-):127609856-127664754 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.127289745T>G | ICGC_ssm_v3_166276 | HCC98T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-132-3p |
agacttACTGTTAatcatt |
0 | UAACAGUC | m7a | Created | no TS | -0.064 |
-0.91 |
hsa-miR-212-3p |
agacttACTGTTAatcatt |
0 | UAACAGUC | m7a | Created | no TS | -0.068 |
-0.32 |
hsa-miR-548a-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.114 | -0.103 |
0.04 |
hsa-miR-548ab |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.133 | -0.103 |
-0.24 |
hsa-miR-548ak |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.094 | -0.074 |
0.73 |
hsa-miR-548am-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.085 | -0.074 |
0.56 |
hsa-miR-548ap-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.103 | -0.083 |
2.22 |
hsa-miR-548aq-5p |
agacTTACTTTtaatcatt |
0 | GAAAGUAA | m7b | Disrupted | -0.115 | -0.085 |
1.01 |
hsa-miR-548ar-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.133 | -0.103 |
0.47 |
hsa-miR-548as-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.076 | -0.065 |
0.03 |
hsa-miR-548au-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.085 | -0.074 |
0.24 |
hsa-miR-548av-5p |
agactTACTTTTaatcatt |
0 | AAAAGUAC | m7a | Disrupted | NA | NA |
0.19 |
hsa-miR-548b-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.095 | -0.084 |
0.02 |
hsa-miR-548c-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.085 | -0.074 |
0.56 |
hsa-miR-548d-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.095 | -0.084 |
-0.41 |
hsa-miR-548h-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.085 | -0.074 |
0.01 |
hsa-miR-548i |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.123 | -0.093 |
0.65 |
hsa-miR-548j |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.103 | -0.083 |
2.16 |
hsa-miR-548k |
agactTACTTTTaatcatt |
0 | AAAAGUAC | m7a | Disrupted | NA | NA |
0.23 |
hsa-miR-548l |
agactTACTTTTaatcatt |
0 | AAAAGUAU | m7a | Disrupted | NA | NA | No effect |
hsa-miR-548n |
agactTACTTTTaatcatt |
0 | CAAAAGUA | m7b | Disrupted | -0.13 | -0.084 |
-0.04 |
hsa-miR-548o-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.085 | -0.074 |
0.56 |
hsa-miR-548t-5p |
agacttACTTTTaatcatt |
0 | CAAAAGUG | m6b | Disrupted | -0.181 | -0.209 |
0.63 |
hsa-miR-548w |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.094 | -0.074 |
2.05 |
hsa-miR-548y |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.115 | -0.085 |
0.93 |
hsa-miR-559 |
agacTTACTTTtaatcatt |
0 | UAAAGUAA | m7b | Disrupted | -0.085 | -0.037 |
2.65 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.127289923A>A | ICGC_51022 | TCGA-FU-A23K-01A-11D-A16O-08 | CervicalSquamousCellCarcinoma(TCGA,US) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1224-3p |
aacagtttgAGGTGGGcct |
0 | CCCCACCU | m7b | (m6b->m7b) | no TS | -0.188 |
-1.65 |
hsa-miR-371a-5p |
aacaGTTTGAGgtgggcct |
0 | ACUCAAAC | m7b | Created | -0.048 | -0.107 |
-7.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.127290163A>C | ICGC_1345947 | TCGA-AX-A05Z-01A-11W-A027-09 | UterineCorpusEndometrioidCarcinoma(TCGA,US) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.127290248T>G | ICGC_ssm_v3_72916 | HCC132T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |