SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001139510 |
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Gene Symbol: | ECHDC1 |
Description: | Homo sapiens enoyl CoA hydratase domain containing 1 (ECHDC1), transcript variant 1, mRNA. |
Gene Location: | chr6(-):127609856-127663552 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.127289177C>T | COSN9295913 | AOCS-091-1-3 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1244 |
aaacAACTACTgttgatgt |
2 |
AAGUAGUU | m7b | Disrupted | -0.124000 | no TS | No effect |
hsa-miR-199a-3p |
aaacaACTACTGTtgatgt |
2 |
ACAGUAGU | m8a | Disrupted | -0.200000 | no TS |
0.750000 |
hsa-miR-199b-3p |
aaacaACTACTGTtgatgt |
2 |
ACAGUAGU | m8a | Disrupted | -0.200000 | no TS |
0.750000 |
hsa-miR-3129-5p |
aaacaACTACTGttgatgt |
2 |
GCAGUAGU | m7b | Disrupted | -0.200000 | no TS |
0.220000 |
hsa-miR-421 |
aaacaactaCTGTTGATgt |
2 |
AUCAACAG | m8a | (m8a->m7a) | -0.332000 | -0.175000 |
-0.660000 |
hsa-miR-4703-3p |
aaaCAACTACtgttgatgt |
2 |
UGUAGUUG | m7b | (m7b->m6c) | -0.212000 | no TS |
0.250000 |
hsa-miR-4709-5p |
aaacaactACTGTTGatgt |
2 |
ACAACAGU | m7b | Disrupted | -0.547000 | -0.283000 |
1.200000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.127289745T>G | COSN1324630 | HCC98T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-132-3p |
agacttACTGTTAatcatt |
0 | UAACAGUC | m7a | Created | no TS | -0.110000 |
-0.930000 |
hsa-miR-212-3p |
agacttACTGTTAatcatt |
0 | UAACAGUC | m7a | Created | no TS | -0.114000 |
-0.320000 |
hsa-miR-548a-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.290000 | -0.220000 |
0.040000 |
hsa-miR-548ab |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.309000 | -0.220000 |
-0.240000 |
hsa-miR-548ak |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.270000 | -0.191000 |
0.730000 |
hsa-miR-548am-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.570000 |
hsa-miR-548ap-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.279000 | -0.200000 |
2.220000 |
hsa-miR-548aq-5p |
agacTTACTTTtaatcatt |
2 |
GAAAGUAA | m7b | Disrupted | -0.291000 | -0.202000 |
1.010000 |
hsa-miR-548ar-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.309000 | -0.220000 |
0.470000 |
hsa-miR-548as-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.252000 | -0.182000 |
0.030000 |
hsa-miR-548au-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.240000 |
hsa-miR-548av-5p |
agactTACTTTTaatcatt |
0 | AAAAGUAC | m7a | Disrupted | NA | NA |
0.190000 |
hsa-miR-548b-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.271000 | -0.201000 |
0.020000 |
hsa-miR-548c-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.570000 |
hsa-miR-548d-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.271000 | -0.201000 |
-0.410000 |
hsa-miR-548h-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.010000 |
hsa-miR-548i |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.299000 | -0.210000 |
0.650000 |
hsa-miR-548j |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.279000 | -0.200000 |
2.160000 |
hsa-miR-548k |
agactTACTTTTaatcatt |
0 | AAAAGUAC | m7a | Disrupted | NA | NA |
0.230000 |
hsa-miR-548l |
agactTACTTTTaatcatt |
0 | AAAAGUAU | m7a | Disrupted | NA | NA | No effect |
hsa-miR-548n |
agactTACTTTTaatcatt |
2 |
CAAAAGUA | m7b | Disrupted | -0.294000 | -0.143000 |
-0.040000 |
hsa-miR-548o-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.570000 |
hsa-miR-548t-5p |
agacttACTTTTaatcatt |
0 | CAAAAGUG | m6b | Disrupted | -0.286000 | -0.268000 |
0.630000 |
hsa-miR-548w |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.270000 | -0.191000 |
2.050000 |
hsa-miR-548y |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.291000 | -0.202000 |
0.930000 |
hsa-miR-559 |
agacTTACTTTtaatcatt |
2 |
UAAAGUAA | m7b | Disrupted | -0.261000 | -0.154000 |
2.650000 |
hsa-miR-132-3p |
agacttACTGTTAatcatt |
0 | UAACAGUC | m7a | Created | no TS | -0.110000 |
-0.930000 |
hsa-miR-212-3p |
agacttACTGTTAatcatt |
0 | UAACAGUC | m7a | Created | no TS | -0.114000 |
-0.320000 |
hsa-miR-548a-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.290000 | -0.220000 |
0.040000 |
hsa-miR-548ab |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.309000 | -0.220000 |
-0.240000 |
hsa-miR-548ak |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.270000 | -0.191000 |
0.730000 |
hsa-miR-548am-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.570000 |
hsa-miR-548ap-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.279000 | -0.200000 |
2.220000 |
hsa-miR-548aq-5p |
agacTTACTTTtaatcatt |
2 |
GAAAGUAA | m7b | Disrupted | -0.291000 | -0.202000 |
1.010000 |
hsa-miR-548ar-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.309000 | -0.220000 |
0.470000 |
hsa-miR-548as-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.252000 | -0.182000 |
0.030000 |
hsa-miR-548au-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.240000 |
hsa-miR-548av-5p |
agactTACTTTTaatcatt |
0 | AAAAGUAC | m7a | Disrupted | NA | NA |
0.190000 |
hsa-miR-548b-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.271000 | -0.201000 |
0.020000 |
hsa-miR-548c-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.570000 |
hsa-miR-548d-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.271000 | -0.201000 |
-0.410000 |
hsa-miR-548h-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.010000 |
hsa-miR-548i |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.299000 | -0.210000 |
0.650000 |
hsa-miR-548j |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.279000 | -0.200000 |
2.160000 |
hsa-miR-548k |
agactTACTTTTaatcatt |
0 | AAAAGUAC | m7a | Disrupted | NA | NA |
0.230000 |
hsa-miR-548l |
agactTACTTTTaatcatt |
0 | AAAAGUAU | m7a | Disrupted | NA | NA | No effect |
hsa-miR-548n |
agactTACTTTTaatcatt |
2 |
CAAAAGUA | m7b | Disrupted | -0.294000 | -0.143000 |
-0.040000 |
hsa-miR-548o-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.570000 |
hsa-miR-548t-5p |
agacttACTTTTaatcatt |
0 | CAAAAGUG | m6b | Disrupted | -0.286000 | -0.268000 |
0.630000 |
hsa-miR-548w |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.270000 | -0.191000 |
2.050000 |
hsa-miR-548y |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.291000 | -0.202000 |
0.930000 |
hsa-miR-559 |
agacTTACTTTtaatcatt |
2 |
UAAAGUAA | m7b | Disrupted | -0.261000 | -0.154000 |
2.650000 |
hsa-miR-132-3p |
agacttACTGTTAatcatt |
0 | UAACAGUC | m7a | Created | no TS | -0.110000 |
-0.930000 |
hsa-miR-212-3p |
agacttACTGTTAatcatt |
0 | UAACAGUC | m7a | Created | no TS | -0.114000 |
-0.320000 |
hsa-miR-548a-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.290000 | -0.220000 |
0.040000 |
hsa-miR-548ab |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.309000 | -0.220000 |
-0.240000 |
hsa-miR-548ak |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.270000 | -0.191000 |
0.730000 |
hsa-miR-548am-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.570000 |
hsa-miR-548ap-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.279000 | -0.200000 |
2.220000 |
hsa-miR-548aq-5p |
agacTTACTTTtaatcatt |
2 |
GAAAGUAA | m7b | Disrupted | -0.291000 | -0.202000 |
1.010000 |
hsa-miR-548ar-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.309000 | -0.220000 |
0.470000 |
hsa-miR-548as-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.252000 | -0.182000 |
0.030000 |
hsa-miR-548au-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.240000 |
hsa-miR-548av-5p |
agactTACTTTTaatcatt |
0 | AAAAGUAC | m7a | Disrupted | NA | NA |
0.190000 |
hsa-miR-548b-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.271000 | -0.201000 |
0.020000 |
hsa-miR-548c-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.570000 |
hsa-miR-548d-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.271000 | -0.201000 |
-0.410000 |
hsa-miR-548h-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.010000 |
hsa-miR-548i |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.299000 | -0.210000 |
0.650000 |
hsa-miR-548j |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.279000 | -0.200000 |
2.160000 |
hsa-miR-548k |
agactTACTTTTaatcatt |
0 | AAAAGUAC | m7a | Disrupted | NA | NA |
0.230000 |
hsa-miR-548l |
agactTACTTTTaatcatt |
0 | AAAAGUAU | m7a | Disrupted | NA | NA | No effect |
hsa-miR-548n |
agactTACTTTTaatcatt |
2 |
CAAAAGUA | m7b | Disrupted | -0.294000 | -0.143000 |
-0.040000 |
hsa-miR-548o-5p |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.261000 | -0.191000 |
0.570000 |
hsa-miR-548t-5p |
agacttACTTTTaatcatt |
0 | CAAAAGUG | m6b | Disrupted | -0.286000 | -0.268000 |
0.630000 |
hsa-miR-548w |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.270000 | -0.191000 |
2.050000 |
hsa-miR-548y |
agacTTACTTTTaatcatt |
2 |
AAAAGUAA | m8a | Disrupted | -0.291000 | -0.202000 |
0.930000 |
hsa-miR-559 |
agacTTACTTTtaatcatt |
2 |
UAAAGUAA | m7b | Disrupted | -0.261000 | -0.154000 |
2.650000 |
hsa-miR-132-3p |
agacttACTGTTAatcatt |
0 | UAACAGUC | m7a | Created | no TS | -0.11 |
-0.93 |
hsa-miR-212-3p |
agacttACTGTTAatcatt |
0 | UAACAGUC | m7a | Created | no TS | -0.114 |
-0.32 |
hsa-miR-548a-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.29 | -0.22 |
0.04 |
hsa-miR-548ab |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.309 | -0.22 |
-0.24 |
hsa-miR-548ak |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.27 | -0.191 |
0.73 |
hsa-miR-548am-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.261 | -0.191 |
0.57 |
hsa-miR-548ap-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.279 | -0.2 |
2.22 |
hsa-miR-548aq-5p |
agacTTACTTTtaatcatt |
0 | GAAAGUAA | m7b | Disrupted | -0.291 | -0.202 |
1.01 |
hsa-miR-548ar-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.309 | -0.22 |
0.47 |
hsa-miR-548as-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.252 | -0.182 |
0.03 |
hsa-miR-548au-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.261 | -0.191 |
0.24 |
hsa-miR-548av-5p |
agactTACTTTTaatcatt |
0 | AAAAGUAC | m7a | Disrupted | NA | NA |
0.19 |
hsa-miR-548b-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.271 | -0.201 |
0.02 |
hsa-miR-548c-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.261 | -0.191 |
0.57 |
hsa-miR-548d-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.271 | -0.201 |
-0.41 |
hsa-miR-548h-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.261 | -0.191 |
0.01 |
hsa-miR-548i |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.299 | -0.21 |
0.65 |
hsa-miR-548j |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.279 | -0.2 |
2.16 |
hsa-miR-548k |
agactTACTTTTaatcatt |
0 | AAAAGUAC | m7a | Disrupted | NA | NA |
0.23 |
hsa-miR-548l |
agactTACTTTTaatcatt |
0 | AAAAGUAU | m7a | Disrupted | NA | NA | No effect |
hsa-miR-548n |
agactTACTTTTaatcatt |
0 | CAAAAGUA | m7b | Disrupted | -0.294 | -0.143 |
-0.04 |
hsa-miR-548o-5p |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.261 | -0.191 |
0.57 |
hsa-miR-548t-5p |
agacttACTTTTaatcatt |
0 | CAAAAGUG | m6b | Disrupted | -0.286 | -0.268 |
0.63 |
hsa-miR-548w |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.27 | -0.191 |
2.05 |
hsa-miR-548y |
agacTTACTTTTaatcatt |
0 | AAAAGUAA | m8a | Disrupted | -0.291 | -0.202 |
0.93 |
hsa-miR-559 |
agacTTACTTTtaatcatt |
0 | UAAAGUAA | m7b | Disrupted | -0.261 | -0.154 |
2.65 |