| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
| Home | Search | Help | Download | |||||
| RefSeq ID: | NM_001135155 |
|---|---|
| Gene Symbol: | DPF1 |
| Description: | Homo sapiens D4, zinc and double PHD fingers family 1 (DPF1), transcript variant 1, mRNA. |
| Gene Location: | chr19(-):38701648-38714890 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr19:g.38211470G>C | COSN14874519 | LP2000108-DNA_A01 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4738-5p |
gtgcccaCGCTGGatactg |
0 | ACCAGCGC | m6b | Created | no TS | -0.173000 |
-3.370000 |
| hsa-miR-5092 |
gtgcccacgGTGGATactg |
9 |
AAUCCACG | m6b | Disrupted | -0.080000 | no TS | No effect |
| hsa-miR-5586-5p |
gtgcccacGCTGGATActg |
0 | UAUCCAGC | m8a | Created | no TS | -0.227000 |
-0.280000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr19:g.38211813T>C | COSN6668547 | CHC320T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-1226-5p |
cttctcCCCTCAaagccat |
9 |
GUGAGGGC | m6b | Disrupted | -0.133000 | no TS |
0.010000 |
| hsa-miR-1914-3p |
cttctCCCCTCaaagccat |
9 |
GGAGGGGU | m6b | Disrupted | -0.518000 | -0.361000 |
0.020000 |
| hsa-miR-3184-5p |
cttctCCCCTCAaagccat |
4 |
UGAGGGGC | m7a | Disrupted | -0.583000 | -0.442000 | No effect |
| hsa-miR-423-5p |
cttctCCCCTCAaagccat |
4 |
UGAGGGGC | m7a | Disrupted | -0.549000 | -0.401000 | No effect |
| hsa-miR-4260 |
cttctccCCCCAAagccat |
1 |
CUUGGGGC | m6b | Created | -0.006000 | -0.093000 |
-1.320000 |
| hsa-miR-450a-3p |
cttctccCCCCAAagccat |
0 | AUUGGGGA | m6b | Created | no TS | -0.078000 | No effect |
| hsa-miR-4525 |
cttcTCCCCCCaaagccat |
0 | GGGGGGAU | m7a | Created | -0.188000 | -0.188000 |
-0.340000 |
| hsa-miR-4723-5p |
cttCTCCCCCcaaagccat |
0 | UGGGGGAG | m7b | (m6c->m7b) | -0.497000 | -0.700000 |
-0.230000 |
| hsa-miR-5194 |
cttctCCCCTCAaagccat |
9 |
UGAGGGGU | m7a | Disrupted | -0.489000 | -0.336000 | No effect |
| hsa-miR-5572 |
cttctccCCCCAAagccat |
0 | GUUGGGGU | m6b | Created | -0.112000 | -0.193000 | No effect |
| hsa-miR-5698 |
cttCTCCCCCcaaagccat |
0 | UGGGGGAG | m7b | (m6c->m7b) | -0.486000 | -0.707000 |
-0.020000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr19:g.38212029C>T | COSN1215225 | HCC61T | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-21-3p |
ggggTGGTGTTcgcctacc |
0 | CAACACCA | m7b | Created | no TS | -0.022000 |
-8.390000 |
| hsa-miR-29a-3p |
ggggTGGTGCTcgcctacc |
9 |
UAGCACCA | m7b | Disrupted | -0.082000 | no TS |
2.720000 |
| hsa-miR-29b-3p |
ggggTGGTGCTcgcctacc |
9 |
UAGCACCA | m7b | Disrupted | -0.073000 | no TS |
2.720000 |
| hsa-miR-29c-3p |
ggggTGGTGCTcgcctacc |
9 |
UAGCACCA | m7b | Disrupted | -0.082000 | no TS |
2.720000 |
| hsa-miR-3591-3p |
ggggTGGTGTTcgcctacc |
0 | AAACACCA | m7b | Created | no TS | -0.031000 |
-0.580000 |
| hsa-miR-3663-3p |
ggggtGGTGCTCgcctacc |
3 |
UGAGCACC | m7b | Disrupted | -0.184000 | no TS |
2.740000 |
| hsa-miR-21-3p |
ggggTGGTGTTcgcctacc |
0 | CAACACCA | m7b | Created | no TS | -0.022000 |
-8.390000 |
| hsa-miR-29a-3p |
ggggTGGTGCTcgcctacc |
9 |
UAGCACCA | m7b | Disrupted | -0.082000 | no TS |
2.720000 |
| hsa-miR-29b-3p |
ggggTGGTGCTcgcctacc |
9 |
UAGCACCA | m7b | Disrupted | -0.073000 | no TS |
2.720000 |
| hsa-miR-29c-3p |
ggggTGGTGCTcgcctacc |
9 |
UAGCACCA | m7b | Disrupted | -0.082000 | no TS |
2.720000 |
| hsa-miR-3591-3p |
ggggTGGTGTTcgcctacc |
0 | AAACACCA | m7b | Created | no TS | -0.031000 |
-0.580000 |
| hsa-miR-3663-3p |
ggggtGGTGCTCgcctacc |
3 |
UGAGCACC | m7b | Disrupted | -0.184000 | no TS |
2.740000 |
| hsa-miR-21-3p |
ggggTGGTGTTcgcctacc |
0 | CAACACCA | m7b | Created | no TS | -0.022000 |
-8.390000 |
| hsa-miR-29a-3p |
ggggTGGTGCTcgcctacc |
9 |
UAGCACCA | m7b | Disrupted | -0.082000 | no TS |
2.720000 |
| hsa-miR-29b-3p |
ggggTGGTGCTcgcctacc |
9 |
UAGCACCA | m7b | Disrupted | -0.073000 | no TS |
2.720000 |
| hsa-miR-29c-3p |
ggggTGGTGCTcgcctacc |
9 |
UAGCACCA | m7b | Disrupted | -0.082000 | no TS |
2.720000 |
| hsa-miR-3591-3p |
ggggTGGTGTTcgcctacc |
0 | AAACACCA | m7b | Created | no TS | -0.031000 |
-0.580000 |
| hsa-miR-3663-3p |
ggggtGGTGCTCgcctacc |
3 |
UGAGCACC | m7b | Disrupted | -0.184000 | no TS |
2.740000 |
| hsa-miR-21-3p |
ggggTGGTGTTcgcctacc |
0 | CAACACCA | m7b | Created | no TS | -0.022 |
-8.39 |
| hsa-miR-29a-3p |
ggggTGGTGCTcgcctacc |
0 | UAGCACCA | m7b | Disrupted | -0.082 | no TS |
2.72 |
| hsa-miR-29b-3p |
ggggTGGTGCTcgcctacc |
0 | UAGCACCA | m7b | Disrupted | -0.073 | no TS |
2.72 |
| hsa-miR-29c-3p |
ggggTGGTGCTcgcctacc |
0 | UAGCACCA | m7b | Disrupted | -0.082 | no TS |
2.72 |
| hsa-miR-3591-3p |
ggggTGGTGTTcgcctacc |
0 | AAACACCA | m7b | Created | no TS | -0.031 |
-0.58 |
| hsa-miR-3663-3p |
ggggtGGTGCTCgcctacc |
0 | UGAGCACC | m7b | Disrupted | -0.184 | no TS |
2.74 |