SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_006892 |
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Gene Symbol: | DNMT3B |
Description: | Homo sapiens DNA (cytosine-5-)-methyltransferase 3 beta (DNMT3B), transcript variant 7, mRNA. |
Gene Location: | chr20(+):31350190-31397162 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr20:g.32807932T>C | COSN1869824 | RK108_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-329 |
ccactggGGTGTGTggcag |
0 | AACACACC | m7b | Disrupted | -0.064000 | no TS |
1.960000 |
hsa-miR-362-3p |
ccactggGGTGTGTggcag |
0 | AACACACC | m7b | Disrupted | -0.064000 | no TS |
0.640000 |
hsa-miR-329 |
ccactggGGTGTGTggcag |
0 | AACACACC | m7b | Disrupted | -0.064 | no TS |
1.96 |
hsa-miR-362-3p |
ccactggGGTGTGTggcag |
0 | AACACACC | m7b | Disrupted | -0.064 | no TS |
0.64 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr20:g.32808309T>G | COSN9125903 | AOCS-155-3-5 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4421 |
ccaAGACAGGTattgcaag |
0 | ACCUGUCU | m8a | Created | no TS | -0.229000 |
-0.350000 |
hsa-miR-5699 |
ccaAGACAGGtattgcaag |
0 | UCCUGUCU | m7b | (m6b->m7b) | no TS | -0.219000 |
-1.180000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr20:g.32808502G>T | COSN1869825 | RK209_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1973 |
ctggagtcTGCACGGgacc |
0 | ACCGUGCA | m7b | Disrupted | -0.220000 | no TS |
0.840000 |
hsa-miR-3166 |
ctggaGTCTGCacgggacc |
2 |
CGCAGACA | m6b | Disrupted | -0.066000 | no TS |
4.210000 |
hsa-miR-4432 |
ctgGAGTCTTcacgggacc |
0 | AAAGACUC | m7b | (m6b->m7b) | no TS | -0.021000 |
-0.080000 |
hsa-miR-4771 |
ctggAGTCTGCacgggacc |
2 |
AGCAGACU | m7b | Disrupted | -0.372000 | -0.173000 |
3.570000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr20:g.32808557G>A | COSN15034566 | LP6005409-DNA_H01 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1272 |
agggatgaCATCATCatca |
11 |
GAUGAUGA | m7a | Created | -0.007000 | -0.062000 |
1.340000 |
hsa-miR-1322 |
agggatgaCATCATCatca |
0 | GAUGAUGC | m7a | Created | NA | NA |
-0.060000 |
hsa-miR-2964a-5p |
agggatGACATCatcatca |
0 | AGAUGUCC | m6b | Created | no TS | -0.073000 | No effect |
hsa-miR-4757-3p |
agggatgACGTCATcatca |
2 |
CAUGACGU | m7b | Disrupted | -0.148000 | no TS |
1.110000 |
hsa-miR-598 |
agggATGACGTcatcatca |
0 | UACGUCAU | m7b | Disrupted | -0.113000 | no TS |
1.210000 |