SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001369 |
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Gene Symbol: | DNAH5 |
Description: | Homo sapiens dynein, axonemal, heavy chain 5 (DNAH5), mRNA. |
Gene Location: | chr5(-):13690436-13944589 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr5:g.13690385G>T | COSN6864709 | RK144_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4698 |
tttCATTTTGAaaagcaag |
1 |
UCAAAAUG | m8a | Disrupted | -0.133000 | 0.084000 |
0.010000 |
|
hsa-miR-548c-3p |
tttcATTTTTaaaagcaag |
0 | CAAAAAUC | m6b | Created | no TS | 0.049000 | No effect | |
hsa-miR-607 |
tttcatTTTGAAaagcaag |
3 |
GUUCAAAU | m6b | Disrupted | -0.005000 | no TS |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr5:g.13691629G>A | COSN8203867 | ASHPC_0001_Pa_P_2 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-15a-3p |
tctgttaacATGGCCTGgt |
0 | CAGGCCAU | m8a | (m7a->m8a) | no TS | -0.159000 |
0.010000 |
|
hsa-miR-4716-5p |
tctgttAACATGGcctggt |
0 | UCCAUGUU | m7b | Created | no TS | -0.088000 |
-0.150000 |
|
hsa-miR-4717-5p |
tctgttaacGTGGCCTggt |
1 |
UAGGCCAC | m7b | (m7b->m6b) | -0.201000 | no TS |
2.360000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr5:g.13691818T>A | COSN2072266 | RK064_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1297 |
tttTACTTGAttcatcatt |
0 | UUCAAGUA | m7b | (m6c->m7b) | no TS | -0.186000 |
-0.910000 |
|
hsa-miR-15b-3p |
ttttactTGATTCatcatt |
0 | CGAAUCAU | m6b | Created | no TS | -0.086000 | No effect | |
hsa-miR-26a-5p |
tttTACTTGAttcatcatt |
0 | UUCAAGUA | m7b | (m6c->m7b) | no TS | -0.186000 |
-1.940000 |
|
hsa-miR-26b-5p |
tttTACTTGAttcatcatt |
0 | UUCAAGUA | m7b | (m6c->m7b) | no TS | -0.186000 |
-1.860000 |
|
hsa-miR-4465 |
tttTACTTGAttcatcatt |
0 | CUCAAGUA | m7b | (m6c->m7b) | no TS | -0.186000 |
-0.350000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr5:g.13691934T>C | COSN2072268 | RK029_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-32-3p |
agatCTAAATTattgtaac |
0 | CAAUUUAG | m7b | Disrupted | -0.268000 | -0.105000 |
1.180000 |
hsa-miR-32-3p |
agatCTAAATTattgtaac |
0 | CAAUUUAG | m7b | Disrupted | -0.268000 | -0.105000 |
1.180000 |
hsa-miR-32-3p |
agatCTAAATTattgtaac |
0 | CAAUUUAG | m7b | Disrupted | -0.268 | -0.105 |
1.18 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
13691938 | rs199643112 | T | T |
hsa-miR-32-3p hsa-miR-4760-5p hsa-miR-7161-3p hsa-miR-8061 |
2 2 2 2 |
aagatCTAAATTA aagATCTAAAtta AAGATCTAaatta aagATCTAAAtta |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
-0.163 -0.084 -0.309 -0.081 |