SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000109
Gene Symbol: DMD
Description: Homo sapiens dystrophin (DMD), transcript variant Dp427c, mRNA.
Gene Location: chrX(-):31137344-33357726
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chrX:g.31120438->AGG ICGC_sm126107 RK024_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4421 gatactGACAGGTatcaacccag
0 ACCUGUCU m7a Disrupted -0.177000 -0.197000 -0.540000
hsa-miR-5699 gatactGACAGGAggtatcaacccag
0 UCCUGUCU m7a Created -0.158000 -0.172000 -0.080000
hsa-miR-660-3p gatactgaCAGGAGGTatcaacccag
0 ACCUCCUG m8a Created -0.138000 -0.223000 -3.740000
hsa-miR-875-5p gatactgacagGAGGTATcaacccag
0 UAUACCUC m7b (m6b->m7b) no TS -0.035000 0.550000


Mutation Mutation ID Sample Name Cancer Type
chrX:g.31120888G>A ICGC_sm37867 RK012_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chrX:g.31121442T>C ICGC_90C6E74E-2A78-11E2-96E7-04FD496BB9B8 CPCG_0102_Pr_P_P1 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-147a acacacacaCACACACaca
0 GUGUGUGG m7a (m6a->m7a) -0.14 -0.136 -0.08
hsa-miR-223-5p acacacacATACACacaca
0 CGUGUAUU m6b Disrupted -0.02 0.008 1.36
hsa-miR-297 acacacACATACAcacaca
0 AUGUAUGU m7b Disrupted -0.183 -0.108 1.59
hsa-miR-567 acacacACATACacacaca
0 AGUAUGUU m6b Disrupted -0.023 no TS 1.83

Mutation Mutation ID Sample Name Cancer Type
chrX:g.31121862G>T ICGC_1455043 TCGA-BS-A0UV-01A-11D-A10B-09 UterineCorpusEndometrioidCarcinoma(TCGA,US)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3136-5p ttagtaTCAGTCAtgacag
0 CUGACUGA m7b Disrupted -0.318 -0.089 No effect
hsa-miR-4439 ttagtaTCAGTCAtgacag
0 GUGACUGA m7b Disrupted -0.277 -0.048 0.1
hsa-miR-4513 ttagtaTCAGTCatgacag
0 AGACUGAC m6b Disrupted -0.41 -0.254 2.75

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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