SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000109 |
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Gene Symbol: | DMD |
Description: | Homo sapiens dystrophin (DMD), transcript variant Dp427c, mRNA. |
Gene Location: | chrX(-):31137344-33357726 |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chrX:g.31120438->AGG | ICGC_sm126107 | RK024_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4421 |
gatactGACAGGTatcaacccag |
0 | ACCUGUCU | m7a | Disrupted | -0.177000 | -0.197000 |
-0.540000 |
hsa-miR-5699 |
gatactGACAGGAggtatcaacccag |
0 | UCCUGUCU | m7a | Created | -0.158000 | -0.172000 |
-0.080000 |
hsa-miR-660-3p |
gatactgaCAGGAGGTatcaacccag |
0 | ACCUCCUG | m8a | Created | -0.138000 | -0.223000 |
-3.740000 |
hsa-miR-875-5p |
gatactgacagGAGGTATcaacccag |
0 | UAUACCUC | m7b | (m6b->m7b) | no TS | -0.035000 |
0.550000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chrX:g.31120888G>A | ICGC_sm37867 | RK012_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chrX:g.31121442T>C | ICGC_90C6E74E-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-147a |
acacacacaCACACACaca |
0 | GUGUGUGG | m7a | (m6a->m7a) | -0.14 | -0.136 |
-0.08 |
hsa-miR-223-5p |
acacacacATACACacaca |
0 | CGUGUAUU | m6b | Disrupted | -0.02 | 0.008 |
1.36 |
hsa-miR-297 |
acacacACATACAcacaca |
0 | AUGUAUGU | m7b | Disrupted | -0.183 | -0.108 |
1.59 |
hsa-miR-567 |
acacacACATACacacaca |
0 | AGUAUGUU | m6b | Disrupted | -0.023 | no TS |
1.83 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chrX:g.31121862G>T | ICGC_1455043 | TCGA-BS-A0UV-01A-11D-A10B-09 | UterineCorpusEndometrioidCarcinoma(TCGA,US) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3136-5p |
ttagtaTCAGTCAtgacag |
0 | CUGACUGA | m7b | Disrupted | -0.318 | -0.089 | No effect |
hsa-miR-4439 |
ttagtaTCAGTCAtgacag |
0 | GUGACUGA | m7b | Disrupted | -0.277 | -0.048 |
0.1 |
hsa-miR-4513 |
ttagtaTCAGTCatgacag |
0 | AGACUGAC | m6b | Disrupted | -0.41 | -0.254 |
2.75 |