SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_145695
Gene Symbol: DGKB
Description: Homo sapiens diacylglycerol kinase, beta 90kDa (DGKB), transcript variant 1, mRNA.
Gene Location: chr7(-):14215605-14881075
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Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr7:g.14176029T>G 0_271 Prostate cancer
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-583 agggagaCCTCTTTGaaag
5
CAAAGAGG m8a Disrupted -0.388 -0.192 0.03

Mutation Mutation ID Sample Name Cancer Type
chr7:g.14176185A>C COSN15247149 LP6007420-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4635 tttcCTTCAAGttacttac
4
UCUUGAAG m7b Disrupted -0.153000 no TS 0.840000

Mutation Mutation ID Sample Name Cancer Type
chr7:g.14176778A>G COSN8405674 tumor_4163639 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][diffuse_large_B_cell_lymphoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-374c-3p tttgaCTAAGTaaccacaa
3
CACUUAGC m6b Created -0.120000 -0.228000 -0.250000
hsa-miR-409-5p tttgactaaGTAACCacaa
0 AGGUUACC m6b Created no TS -0.189000 -4.020000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
14176616 rs193084573 G G hsa-miR-374c-3p
3
gcCTAAGTAtaaa
Disrupted
N
-0.12
A hsa-miR-6083
2
gcctaaATATAAA
Created
N
-0.005

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