SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_004080 |
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Gene Symbol: | DGKB |
Description: | Homo sapiens diacylglycerol kinase, beta 90kDa (DGKB), transcript variant 1, mRNA. |
Gene Location: | chr7(-):14184673-14881075 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14145489C>A | ICGC_EEA93114-2A78-11E2-88F0-2CFD496BB9B8 | CPCG_0183_Pr_P_P1 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-149-5p |
tgacaGAGCCAGActctgt |
0 | UCUGGCUC | m8a | Disrupted | -0.52 | -0.181 | No effect | |
hsa-miR-431-5p |
tgacagaGCAAGACtctgt |
0 | UGUCUUGC | m7b | Created | no TS | -0.188 | No effect | |
hsa-miR-5691 |
tgaCAGAGCAAgactctgt |
0 | UUGCUCUG | m8a | Created | no TS | -0.25 |
-0.01 |
|
hsa-miR-664-5p |
tgacagAGCCAGactctgt |
0 | ACUGGCUA | m6b | Disrupted | -0.574 | -0.473 | No effect | |
hsa-miR-760 |
tgaCAGAGCCagactctgt |
0 | CGGCUCUG | m7b | (m7b->m6c) | -0.297 | no TS |
1.69 |
|
hsa-miR-924 |
tgacagagcAAGACTCTgt |
0 | AGAGUCUU | m8a | (m7a->m8a) | no TS | -0.118 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14145505G>T | COSN9833271 | AOCS-076-1-3 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2392 |
tgcactCCATCCTgggtga |
0 | UAGGAUGG | m7b | Created | no TS | -0.101000 | No effect | |
hsa-miR-3135b |
tgcaCTCCAGCCtgggtga |
1 |
GGCUGGAG | m8a | Disrupted | -0.195000 | no TS |
17.690000 |
|
hsa-miR-3652 |
tgcacTCCAGCCtgggtga |
1 |
CGGCUGGA | m7b | Disrupted | -0.111000 | no TS |
0.010000 |
|
hsa-miR-4430 |
tgcacTCCAGCCTgggtga |
1 |
AGGCUGGA | m8a | Disrupted | -0.101000 | no TS |
3.120000 |
|
hsa-miR-4534 |
tgcaCTCCATCCtgggtga |
0 | GGAUGGAG | m8a | Created | no TS | -0.114000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14145536C>T | COSN7964510 | 8016470 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1304-3p |
ctgcggttgCAGTGAGcca |
1 |
UCUCACUG | m7b | (m7b->m6b) | -0.064000 | -0.020000 |
4.210000 |
|
hsa-miR-4418 |
ctgcggtTGCAGTGagcca |
0 | CACUGCAG | m7a | Disrupted | NA | NA | No effect | |
hsa-miR-4772-3p |
ctgcgGTTGCAGtgagcca |
3 |
CCUGCAAC | m7b | Disrupted | -0.181000 | -0.122000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14146118G>C | COSN2205791 | RK056_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1343 |
agatatcttCCAGGAagtt |
0 | CUCCUGGG | m6b | Created | -0.174000 | -0.241000 | No effect | |
hsa-miR-2276 |
agatatCTTGCAGgaagtt |
3 |
UCUGCAAG | m7b | Disrupted | -0.202000 | -0.102000 | No effect | |
hsa-miR-3074-5p |
agatatcttGCAGGAAgtt |
1 |
GUUCCUGC | m7b | (m7b->m6b) | -0.108000 | 0.016000 |
0.020000 |
|
hsa-miR-3690 |
agatatctTCCAGGaagtt |
0 | ACCUGGAC | m6b | Created | no TS | -0.078000 |
-2.160000 |
|
hsa-miR-4254 |
agatatctTCCAGGaagtt |
0 | GCCUGGAG | m6b | Created | no TS | -0.084000 |
-3.640000 |
|
hsa-miR-4772-3p |
agatatcTTGCAGGaagtt |
3 |
CCUGCAAC | m7a | Disrupted | -0.181000 | -0.181000 | No effect | |
hsa-miR-875-3p |
agatatcTTCCAGGaagtt |
2 |
CCUGGAAA | m7a | Created | -0.038000 | -0.038000 | No effect | |
hsa-miR-1343 |
agatatcttCCAGGAagtt |
0 | CUCCUGGG | m6b | Created | -0.174 | -0.241 | No effect | |
hsa-miR-2276 |
agatatCTTGCAGgaagtt |
0 | UCUGCAAG | m7b | Disrupted | -0.202 | -0.102 | No effect | |
hsa-miR-3074-5p |
agatatcttGCAGGAAgtt |
0 | GUUCCUGC | m7b | (m7b->m6b) | -0.108 | 0.016 |
0.02 |
|
hsa-miR-3690 |
agatatctTCCAGGaagtt |
0 | ACCUGGAC | m6b | Created | no TS | -0.078 |
-2.16 |
|
hsa-miR-4254 |
agatatctTCCAGGaagtt |
0 | GCCUGGAG | m6b | Created | no TS | -0.084 |
-3.64 |
|
hsa-miR-4772-3p |
agatatcTTGCAGGaagtt |
0 | CCUGCAAC | m7a | Disrupted | -0.181 | -0.181 | No effect | |
hsa-miR-875-3p |
agatatcTTCCAGGaagtt |
0 | CCUGGAAA | m7a | Created | -0.038 | -0.038 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14146261G>A | COSN9833274 | AOCS-107-1-4 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3911 |
gataTCCACACttctaaga |
0 | UGUGUGGA | m7b | Created | no TS | -0.129000 |
-0.070000 |
|
hsa-miR-4752 |
gatATCCACActtctaaga |
0 | UUGUGGAU | m7b | (m6c->m7b) | no TS | -0.112000 |
-1.010000 |
|
hsa-miR-4795-5p |
gatatccaCACTTCTaaga |
2 |
AGAAGUGG | m7a | Created | -0.110000 | -0.110000 |
-0.010000 |
|
hsa-miR-595 |
gatatcCACACTTCtaaga |
0 | GAAGUGUG | m8a | Created | no TS | -0.007000 |
-0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14146458C>A | COSN14940959 | LP6005409-DNA_F03 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4282 |
atAAATTTTAagctattga |
1 |
UAAAAUUU | m8a | (m7b->m8a) | 0.665000 | 0.778000 | No effect | |
hsa-miR-5579-3p |
ataaatttTAAGCTAttga |
2 |
UUAGCUUA | m7b | Created | -0.316000 | -0.348000 |
-3.770000 |
|
hsa-miR-590-5p |
ataaatttTAAGCTattga |
2 |
GAGCUUAU | m6b | Created | -0.191000 | -0.184000 |
-0.930000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14146466T>A | COSN6354799 | RK190_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4686 |
gtgtGCAGATAaattttca |
1 |
UAUCUGCU | m7a | Disrupted | 0.003000 | no TS | No effect | |
hsa-miR-544a |
gtgTGCAGAAaaattttca |
5 |
AUUCUGCA | m7b | (m6c->m7b) | -0.110000 | -0.119000 |
-2.410000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14146793C>G | COSN9833281 | AOCS-160-1-6 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1255b-2-3p |
caattAGTGGTaatagtgg |
1 |
AACCACUU | m6b | Created | -0.207000 | -0.239000 |
-0.140000 |
|
hsa-miR-556-3p |
caattagtGGTAATAgtgg |
14 |
AUAUUACC | m7b | Created | 0.083000 | 0.142000 |
-1.650000 |
|
hsa-miR-5682 |
caattaGTGCTAatagtgg |
6 |
GUAGCACC | m6b | Disrupted | -0.077000 | -0.044000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14146915G>A | COSN2205795 | RK001_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-let-7a-2-3p |
atCTGTACAGtagaaagct |
0 | CUGUACAG | m8a | (m8a->m7b) | -0.011000 | -0.022000 |
0.200000 |
|
hsa-let-7g-3p |
atCTGTACAGtagaaagct |
0 | CUGUACAG | m8a | (m8a->m7b) | -0.002000 | -0.012000 |
1.020000 |
|
hsa-miR-1183 |
atctgTACAGTagaaagct |
0 | CACUGUAG | m6b | Disrupted | 0.047000 | no TS |
5.630000 |
|
hsa-miR-4482-3p |
atctgtacAATAGAAAgct |
0 | UUUCUAUU | m8a | Created | -0.027000 | 0.209000 | No effect | |
hsa-let-7a-2-3p |
atCTGTACAGtagaaagct |
0 | CUGUACAG | m8a | (m8a->m7b) | -0.011 | -0.022 |
0.2 |
|
hsa-let-7g-3p |
atCTGTACAGtagaaagct |
0 | CUGUACAG | m8a | (m8a->m7b) | -0.002 | -0.012 |
1.02 |
|
hsa-miR-1183 |
atctgTACAGTagaaagct |
0 | CACUGUAG | m6b | Disrupted | 0.047 | no TS |
5.63 |
|
hsa-miR-4482-3p |
atctgtacAATAGAAAgct |
0 | UUUCUAUU | m8a | Created | -0.027 | 0.209 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14146936T>A | COSN7655217 | PCSI_0083_Pa_P_526 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-33a-3p |
gtttgtgAAACATTcttaa |
2 |
CAAUGUUU | m7b | Created | 0.101000 | 0.252000 | No effect | |
hsa-miR-5096 |
gtttGTGAAACattcttaa |
2 |
GUUUCACC | m7a | Created | -0.071000 | -0.071000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14147061G>T | COSN8405663 | tumor_4166706 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4763-5p |
ctacaatgGGCAGGCaggc |
1 |
CGCCUGCC | m7b | Disrupted | -0.669000 | -0.537000 |
4.940000 |
|
hsa-miR-591 |
ctacaATGGTCaggcaggc |
0 | AGACCAUG | m6b | Created | no TS | 0.015000 |
-4.670000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14147199A>G | COSN4962572 | SS6003311 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-133a |
atccaGACCAAAagaaaga |
0 | UUUGGUCC | m7a | Disrupted | 0.007000 | no TS |
10.160000 |
|
hsa-miR-133b |
atccaGACCAAAagaaaga |
0 | UUUGGUCC | m7a | Disrupted | 0.007000 | no TS |
10.160000 |
|
hsa-miR-4527 |
atcCAGACCAaaagaaaga |
1 |
UGGUCUGC | m7a | (m7a->m6b) | -0.058000 | no TS |
0.020000 |
|
hsa-miR-133a |
atccaGACCAAAagaaaga |
0 | UUUGGUCC | m7a | Disrupted | 0.007000 | no TS |
10.160000 |
|
hsa-miR-133b |
atccaGACCAAAagaaaga |
0 | UUUGGUCC | m7a | Disrupted | 0.007000 | no TS |
10.160000 |
|
hsa-miR-4527 |
atcCAGACCAaaagaaaga |
1 |
UGGUCUGC | m7a | (m7a->m6b) | -0.058000 | no TS |
0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14147246G>A | COSN8787711 | SS6003111 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-130a-3p |
atcacTTGCACTGgtataa |
0 | CAGUGCAA | m8a | Created | no TS | 0.043000 |
-0.050000 |
|
hsa-miR-130b-3p |
atcacTTGCACTGgtataa |
0 | CAGUGCAA | m8a | Created | no TS | 0.015000 | No effect | |
hsa-miR-148a-3p |
atcactTGCACTGgtataa |
1 |
UCAGUGCA | m7b | Created | -0.035000 | -0.100000 |
-0.060000 |
|
hsa-miR-148b-3p |
atcactTGCACTGgtataa |
1 |
UCAGUGCA | m7b | Created | -0.035000 | -0.100000 |
-0.050000 |
|
hsa-miR-152 |
atcactTGCACTGgtataa |
1 |
UCAGUGCA | m7b | Created | -0.035000 | -0.100000 | No effect | |
hsa-miR-1825 |
atcacttGCACTGGtataa |
0 | UCCAGUGC | m7b | Created | no TS | -0.131000 |
-0.530000 |
|
hsa-miR-301a-3p |
atcacTTGCACTGgtataa |
0 | CAGUGCAA | m8a | Created | no TS | -0.013000 |
-0.380000 |
|
hsa-miR-301b |
atcacTTGCACTGgtataa |
0 | CAGUGCAA | m8a | Created | no TS | -0.013000 |
-0.290000 |
|
hsa-miR-3666 |
atcacTTGCACTGgtataa |
0 | CAGUGCAA | m8a | Created | no TS | 0.015000 |
-1.350000 |
|
hsa-miR-4295 |
atcacTTGCACTGgtataa |
0 | CAGUGCAA | m8a | Created | no TS | 0.025000 | No effect | |
hsa-miR-454-3p |
atcacTTGCACTggtataa |
0 | UAGUGCAA | m7b | Created | no TS | -0.022000 |
-0.690000 |
|
hsa-miR-4738-5p |
atcacttGCGCTGGTataa |
0 | ACCAGCGC | m8a | Disrupted | -0.215000 | no TS |
6.880000 |
|
hsa-miR-634 |
atcacttgcGCTGGTataa |
0 | AACCAGCA | m6b | Disrupted | -0.058000 | no TS |
2.980000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14147286T>C | COSN2205796 | RK092_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4775 |
ccaggAAAATTAtgattac |
2 |
UUAAUUUU | m7b | Disrupted | 1.218000 | 0.960000 | No effect | |
hsa-miR-4775 |
ccaggAAAATTAtgattac |
0 | UUAAUUUU | m7b | Disrupted | 1.218 | 0.96 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14147425G>T | COSN8405664 | tumor_4120193 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-141-5p |
tgctataatGGAAGATtac |
10 |
CAUCUUCC | m7b | (m7b->m6b) | 0.034000 | 0.068000 |
0.300000 |
|
hsa-miR-4275 |
tgctaTAATTGaagattac |
2 |
CCAAUUAC | m6b | Created | -0.061000 | 0.056000 |
-0.040000 |
|
hsa-miR-4528 |
tgcTATAATGgaagattac |
6 |
UCAUUAUA | m7b | (m7b->m6c) | 0.161000 | no TS |
0.170000 |
|
hsa-miR-885-5p |
tgctaTAATGGAagattac |
0 | UCCAUUAC | m7a | Disrupted | 0.056000 | no TS |
0.210000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14147616G>A | COSN8515650 | 227_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14148044A>C | COSN8787712 | SS6003149 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3682-5p |
cttgaagGAAGTAaatgat |
4 |
CUACUUCU | m6b | Disrupted | -0.026000 | no TS | No effect | |
hsa-miR-4699-3p |
cttgaaggaAGTAAATgat |
12 |
AAUUUACU | m7b | (m7b->m6b) | 0.176000 | 0.134000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14148128C>T | COSN7964513 | 8033471 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-27b-5p |
caatcaAAGCTCaatagat |
7 |
AGAGCUUA | m6b | Disrupted | -0.079000 | no TS |
0.410000 |
|
hsa-miR-4461 |
caatcaaagCTCAATagat |
7 |
GAUUGAGA | m6b | Disrupted | 0.002000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14148196G>A | COSN6354806 | RK178_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4506 |
gagtgagttACCCATTaat |
7 |
AAAUGGGU | m7b | (m6b->m7b) | -0.075000 | -0.205000 |
0.010000 |
|
hsa-miR-555 |
gagtgagTTACCCattaat |
0 | AGGGUAAG | m6b | Created | no TS | -0.084000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14148508G>T | COSN2205801 | RK021_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-548aa |
atagaacgcGGTTTTTatt |
0 | AAAAACCA | m7a | (m7a->m6a) | NA | NA |
0.070000 |
|
hsa-miR-548ac |
atagaacgcGGTTTTTatt |
0 | CAAAAACC | m7b | (m7b->m6b) | 0.267000 | 0.356000 |
0.220000 |
|
hsa-miR-548ap-3p |
atagaacgcGGTTTTTatt |
0 | AAAAACCA | m7a | (m7a->m6a) | NA | NA |
-0.460000 |
|
hsa-miR-548at-3p |
atagaacgCGGTTTTtatt |
0 | CAAAACCG | m7b | Disrupted | -0.103000 | no TS |
4.480000 |
|
hsa-miR-548d-3p |
atagaacgcGGTTTTTatt |
0 | CAAAAACC | m7b | (m7b->m6b) | 0.242000 | 0.345000 |
0.220000 |
|
hsa-miR-548h-3p |
atagaacgcGGTTTTTatt |
0 | CAAAAACC | m7b | (m7b->m6b) | 0.282000 | 0.363000 |
4.630000 |
|
hsa-miR-548t-3p |
atagaacgcGGTTTTTatt |
0 | AAAAACCA | m7a | (m7a->m6a) | NA | NA |
0.070000 |
|
hsa-miR-548z |
atagaacgcGGTTTTTatt |
0 | CAAAAACC | m7b | (m7b->m6b) | 0.282000 | 0.363000 |
4.630000 |
|
hsa-miR-548aa |
atagaacgcGGTTTTTatt |
0 | AAAAACCA | m7a | (m7a->m6a) | NA | NA |
0.07 |
|
hsa-miR-548ac |
atagaacgcGGTTTTTatt |
0 | CAAAAACC | m7b | (m7b->m6b) | 0.267 | 0.356 |
0.22 |
|
hsa-miR-548ap-3p |
atagaacgcGGTTTTTatt |
0 | AAAAACCA | m7a | (m7a->m6a) | NA | NA |
-0.46 |
|
hsa-miR-548at-3p |
atagaacgCGGTTTTtatt |
0 | CAAAACCG | m7b | Disrupted | -0.103 | no TS |
4.48 |
|
hsa-miR-548d-3p |
atagaacgcGGTTTTTatt |
0 | CAAAAACC | m7b | (m7b->m6b) | 0.242 | 0.345 |
0.22 |
|
hsa-miR-548h-3p |
atagaacgcGGTTTTTatt |
0 | CAAAAACC | m7b | (m7b->m6b) | 0.282 | 0.363 |
4.63 |
|
hsa-miR-548t-3p |
atagaacgcGGTTTTTatt |
0 | AAAAACCA | m7a | (m7a->m6a) | NA | NA |
0.07 |
|
hsa-miR-548z |
atagaacgcGGTTTTTatt |
0 | CAAAAACC | m7b | (m7b->m6b) | 0.282 | 0.363 |
4.63 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.14148810C>A | COSN6354809 | RK070_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-181b-3p |
agaaaaacCAGTGAaacat |
2 |
CUCACUGA | m6b | Created | -0.154000 | -0.264000 |
-0.010000 |
|
hsa-miR-29b-1-5p |
agaaAAACCAGtgaaacat |
4 |
GCUGGUUU | m7b | Created | -0.040000 | -0.212000 |
-1.110000 |
|
hsa-miR-4420 |
agaaaaacCAGTGAaacat |
2 |
GUCACUGA | m6b | Created | -0.145000 | -0.262000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.14149091T>A | COSN8515651 | 381_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3136-3p |
ttagcataaTTGGGCCAtg |
12 |
UGGCCCAA | m8a | (m8a->m7a) | -0.559000 | -0.262000 |
1.580000 |
hsa-miR-4729 |
ttagcATAAATGggccatg |
7 |
UCAUUUAU | m7b | Created | 0.274000 | 0.302000 | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
14146224 | rs187127069 | C | C |
hsa-miR-152-5p hsa-miR-182-3p hsa-miR-29b-1-5p hsa-miR-597-3p |
2 1 4 2 |
atAGAACCAgaaa aTAGAACCAgaaa atagAACCAGAaa atAGAACCAgaaa |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
-0.033 -0.098 -0.04 -0.029 |
A |
hsa-miR-4482-3p hsa-miR-4652-3p hsa-miR-4743-3p hsa-miR-7159-3p |
1 4 6 1 |
ATAGAAAcagaaa atagaAACAGAAA atagaaACAGAAA ATAGAAAcagaaa |
Created Created Created Created |
N N N N |
0.086 0.026 0.031 -0.005 |
|||
14147503 | rs151296872 | T | |||||||
A |
hsa-miR-374b-3p hsa-miR-4282 hsa-miR-4766-3p hsa-miR-590-3p |
8 12 10 9 |
tTGCTAAAatttt ttgctaAAATTTT TTGCTAAaatttt ttgcTAAAATTtt |
Created Created Created Created |
N N N N |
0.017 0.117 0.033 0.228 |
|||
14147629 | rs111361718 | C | C |
hsa-miR-5682 hsa-miR-585-5p |
10 10 |
aaaGTGCTAAtga aaaGTGCTAAtga |
Disrupted Disrupted |
N N |
-0.044 -0.025 |
T |
hsa-miR-141-3p hsa-miR-200a-3p |
10 10 |
aaAGTGTTAatga aaAGTGTTAatga |
Created Created |
N N |
0.052 0.052 |
|||
14147890 | rs190577897 | G | G |
hsa-miR-3929 hsa-miR-4419b hsa-miR-4478 hsa-miR-4687-3p hsa-miR-645 |
2 2 2 2 2 |
acaaCAGCCTAga acaaCAGCCTAga acaaCAGCCTAga acAACAGCCtaga acaacAGCCTAGA |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
-0.029 -0.029 -0.025 -0.044 -0.132 |
T |
hsa-miR-1265 hsa-miR-2392 |
2 2 |
acaACATCCTAga acaaCATCCTAga |
Created Created |
N N |
-0.096 0.001 |
|||
14148044 | rs17167929 | A | A |
hsa-miR-3682-5p hsa-miR-4699-3p hsa-miR-6868-3p |
4 8 3 |
gaagGAAGTAAat gaaggaAGTAAAT GAAGGAAgtaaat |
Disrupted Disrupted Disrupted |
N N N |
-0.026 0.042 -0.018 |
G |
hsa-miR-4777-3p |
4 |
gaagGAGGTAAat |
Created |
N |
-0.088 |
|||
14148363 | rs73269845 | T | T |
hsa-miR-138-2-3p hsa-miR-4482-3p |
1 9 |
acGAAATAGAagt acgaAATAGAAgt |
Disrupted Disrupted |
N N |
-0.038 -0.013 |
C |
hsa-miR-3182 hsa-miR-4652-3p hsa-miR-5705 |
10 9 1 |
acgaaACAGAAGt acgaAACAGAAgt aCGAAACAgaagt |
Created Created Created |
N N N |
-0.126 -0.037 -0.132 |
|||
14148516 | rs137946220 | T | T |
hsa-miR-138-2-3p hsa-miR-4482-3p |
9 8 |
gaaAAATAGAacg gaaaAATAGAAcg |
Disrupted Disrupted |
N N |
0.051 -0.014 |
C |
hsa-miR-4652-3p |
8 |
gaaaAACAGAAcg |
Created |
N |
-0.048 |
|||
14148993 | rs111339380 | C | C |
hsa-miR-21-5p hsa-miR-5579-3p hsa-miR-590-5p |
2 2 2 |
acTAAGCTAatgt acTAAGCTAAtgt acTAAGCTAatgt |
Disrupted Disrupted Disrupted |
N N N |
-0.152 -0.316 -0.166 |
A |
hsa-miR-200a-5p hsa-miR-200b-5p |
2 2 |
acTAAGATAatgt acTAAGATAatgt |
Created Created |
N N |
-0.1 -0.097 |
|||
14149089 | rs180840199 | G | G |
hsa-miR-3136-3p hsa-miR-7155-3p |
12 12 |
ataaTTGGGCCAt ataaTTGGGCCAt |
Disrupted Disrupted |
N N |
-0.559 -0.528 |
T |
hsa-miR-3926 hsa-miR-548s |
12 12 |
ataaTTTGGCCAt ataatTTGGCCAt |
Created Created |
N N |
-0.441 -0.278 |