SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_020946 |
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Gene Symbol: | DENND1A |
Description: | Homo sapiens DENN/MADD domain containing 1A (DENND1A), transcript variant 1, mRNA. |
Gene Location: | chr9(-):126141932-126692417 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.123379740G>A | COSN8331640 | SS6003111 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1206 |
ttcaCATGAACActgctgc |
0 | UGUUCAUG | m8a | Created | no TS | -0.269000 |
-0.740000 |
hsa-miR-124-5p |
ttcacaTGAACACtgctgc |
0 | CGUGUUCA | m7b | Created | no TS | -0.141000 |
-0.470000 |
hsa-miR-4255 |
ttcacatGAACACTGctgc |
0 | CAGUGUUC | m8a | Created | no TS | -0.168000 |
-0.760000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.123380773C>T | COSN8519940 | J52_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-185-3p |
tgtgatacaCAGCCCCagc |
8 |
AGGGGCUG | m7b | (m7b->m6b) | -0.268000 | -0.089000 |
-0.410000 |
hsa-miR-223-5p |
tgtgATACACagccccagc |
1 |
CGUGUAUU | m6b | Disrupted | 0.005000 | -0.022000 |
0.170000 |
hsa-miR-3924 |
tgtgATACATAgccccagc |
0 | AUAUGUAU | m7b | Created | no TS | 0.152000 |
-0.020000 |
hsa-miR-4489 |
tgtgatacaTAGCCCCAgc |
9 |
UGGGGCUA | m8a | (m7a->m8a) | -0.111000 | -0.260000 |
-0.220000 |
hsa-miR-4492 |
tgtgatacaCAGCCCCagc |
1 |
GGGGCUGG | m7a | (m7a->m6a) | -0.075000 | -0.075000 | No effect |
hsa-miR-4675 |
tgtgatacACAGCCCCagc |
2 |
GGGGCUGU | m8a | Disrupted | -0.078000 | no TS |
0.020000 |
hsa-miR-4741 |
tgtgatacACAGCCCcagc |
2 |
CGGGCUGU | m7b | Disrupted | -0.078000 | no TS |
0.040000 |
hsa-miR-762 |
tgtgatacaCAGCCCCagc |
1 |
GGGGCUGG | m7a | (m7a->m6a) | -0.075000 | -0.075000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.123380878C>A | COSN5242180 | SS6003323 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-137 |
tgtttctAGCAATAtacac |
12 |
UUAUUGCU | m7b | Disrupted | -0.105000 | no TS |
14.400000 |
hsa-miR-4777-5p |
tgttTCTAGAAatatacac |
0 | UUCUAGAU | m7a | Created | no TS | -0.048000 |
-0.740000 |
hsa-miR-518d-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-6.120000 |
hsa-miR-518e-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-8.890000 |
hsa-miR-518f-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-6.070000 |
hsa-miR-519a-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-8.890000 |
hsa-miR-519b-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-8.890000 |
hsa-miR-519c-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-8.890000 |
hsa-miR-520c-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-6.120000 |
hsa-miR-522-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-8.890000 |
hsa-miR-523-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-8.890000 |
hsa-miR-526a |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-6.120000 |
hsa-miR-137 |
tgtttctAGCAATAtacac |
12 |
UUAUUGCU | m7b | Disrupted | -0.105000 | no TS |
14.400000 |
hsa-miR-4777-5p |
tgttTCTAGAAatatacac |
0 | UUCUAGAU | m7a | Created | no TS | -0.048000 |
-0.740000 |
hsa-miR-518d-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-6.120000 |
hsa-miR-518e-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-8.890000 |
hsa-miR-518f-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-6.070000 |
hsa-miR-519a-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-8.890000 |
hsa-miR-519b-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-8.890000 |
hsa-miR-519c-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-8.890000 |
hsa-miR-520c-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-6.120000 |
hsa-miR-522-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-8.890000 |
hsa-miR-523-5p |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-8.890000 |
hsa-miR-526a |
tgttTCTAGAaatatacac |
0 | CUCUAGAG | m6b | Created | no TS | -0.046000 |
-6.120000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.123381401G>C | COSN15103123 | SM-4B296 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1268a |
atgcaccgACGCCCGaggg |
2 |
CGGGCGUG | m7a | Created | -0.380000 | -0.380000 | No effect |
hsa-miR-1268b |
atgcaccgACGCCCGaggg |
2 |
CGGGCGUG | m7a | Created | -0.380000 | -0.380000 | No effect |
hsa-miR-3181 |
atgcaccgaGGCCCGAggg |
2 |
AUCGGGCC | m7b | (m7b->m6b) | -0.628000 | -0.337000 |
-1.570000 |
hsa-miR-4750 |
atgcaccgaCGCCCGAGgg |
0 | CUCGGGCG | m8a | (m7a->m8a) | no TS | -0.300000 | No effect |