SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_013994 |
---|---|
Gene Symbol: | DDR1 |
Description: | Homo sapiens discoidin domain receptor tyrosine kinase 1 (DDR1), transcript variant 4, mRNA. |
Gene Location: | chr6(+):30856464-30867933 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.30899321T>G | COSN2159336 | RK091_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-125a-5p |
gcccctccCTCAGGGAgcg |
0 | UCCCUGAG | m8a | Disrupted | -0.299000 | no TS |
2.720000 |
hsa-miR-125b-5p |
gcccctccCTCAGGGAgcg |
0 | UCCCUGAG | m8a | Disrupted | -0.288000 | no TS |
4.370000 |
hsa-miR-1321 |
gccCCTCCCTcagggagcg |
2 |
CAGGGAGG | m7b | (m7b->m6b) | -0.133000 | no TS |
1.070000 |
hsa-miR-149-3p |
gcCCCTCCCTcagggagcg |
2 |
AGGGAGGG | m8a | (m8a->m7a) | -0.373000 | -0.343000 |
-0.090000 |
hsa-miR-345-3p |
gcccctcccTCAGGGagcg |
0 | GCCCUGAA | m6b | Disrupted | -0.122000 | no TS |
23.220000 |
hsa-miR-4319 |
gcccctccCTCAGGGAgcg |
0 | UCCCUGAG | m8a | Disrupted | -0.309000 | no TS |
5.020000 |
hsa-miR-4324 |
gcccctccCTCAGGGagcg |
0 | CCCUGAGA | m7a | Disrupted | NA | NA |
1.850000 |
hsa-miR-4419a |
gcccCTCCCTCAgggagcg |
2 |
UGAGGGAG | m8a | Disrupted | -0.305000 | no TS |
2.220000 |
hsa-miR-4510 |
gcccCTCCCTCAgggagcg |
2 |
UGAGGGAG | m8a | Disrupted | -0.305000 | no TS |
10.870000 |
hsa-miR-4732-3p |
gcccctcccTCAGGGagcg |
0 | GCCCUGAC | m6b | Disrupted | -0.106000 | no TS |
1.980000 |
hsa-miR-4734 |
gcccctCCCGCAGggagcg |
0 | GCUGCGGG | m7b | Created | no TS | -0.251000 |
-0.090000 |
hsa-miR-4739 |
gccCCTCCCTcagggagcg |
2 |
AAGGGAGG | m7b | (m7b->m6b) | -0.133000 | no TS | No effect |
hsa-miR-4756-5p |
gccCCTCCCTcagggagcg |
2 |
CAGGGAGG | m7b | (m7b->m6b) | -0.123000 | no TS |
0.010000 |
hsa-miR-544b |
gcccctcCCTCAGGgagcg |
0 | ACCUGAGG | m7b | Disrupted | -0.147000 | no TS |
8.680000 |
hsa-miR-670 |
gcccctcccTCAGGGAgcg |
0 | GUCCCUGA | m7b | (m7b->m6c) | -0.072000 | no TS |
4.390000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.30899394C>T | COSN1331063 | BN24T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-149-3p |
ttcCCCTCCCgacagccca |
2 |
AGGGAGGG | m7b | (m7b->m6b) | -0.373000 | -0.167000 |
-0.270000 |
hsa-miR-4433-3p |
ttcccCTCCTGacagccca |
0 | ACAGGAGU | m6b | Created | no TS | -0.085000 |
0.030000 |
hsa-miR-4459 |
ttccCCTCCTGacagccca |
0 | CCAGGAGG | m7b | Created | no TS | -0.309000 |
-1.350000 |
hsa-miR-4695-5p |
ttccCCTCCTGacagccca |
0 | CAGGAGGC | m7a | Created | NA | NA |
-1.990000 |
hsa-miR-4728-5p |
ttcCCCTCCCgacagccca |
2 |
UGGGAGGG | m7b | (m7b->m6b) | -0.382000 | -0.167000 |
-0.570000 |
hsa-miR-4768-3p |
ttcccCTCCTGacagccca |
0 | CCAGGAGA | m6b | Created | no TS | -0.079000 |
-1.110000 |
hsa-miR-4779 |
ttcCCCTCCTgacagccca |
2 |
UAGGAGGG | m7b | (m6b->m7b) | -0.152000 | -0.304000 |
-0.130000 |
hsa-miR-149-3p |
ttcCCCTCCCgacagccca |
2 |
AGGGAGGG | m7b | (m7b->m6b) | -0.373000 | -0.167000 |
-0.270000 |
hsa-miR-4433-3p |
ttcccCTCCTGacagccca |
0 | ACAGGAGU | m6b | Created | no TS | -0.085000 |
0.030000 |
hsa-miR-4459 |
ttccCCTCCTGacagccca |
0 | CCAGGAGG | m7b | Created | no TS | -0.309000 |
-1.350000 |
hsa-miR-4695-5p |
ttccCCTCCTGacagccca |
0 | CAGGAGGC | m7a | Created | NA | NA |
-1.990000 |
hsa-miR-4728-5p |
ttcCCCTCCCgacagccca |
2 |
UGGGAGGG | m7b | (m7b->m6b) | -0.382000 | -0.167000 |
-0.570000 |
hsa-miR-4768-3p |
ttcccCTCCTGacagccca |
0 | CCAGGAGA | m6b | Created | no TS | -0.079000 |
-1.110000 |
hsa-miR-4779 |
ttcCCCTCCTgacagccca |
2 |
UAGGAGGG | m7b | (m6b->m7b) | -0.152000 | -0.304000 |
-0.130000 |
hsa-miR-149-3p |
ttcCCCTCCCgacagccca |
2 |
AGGGAGGG | m7b | (m7b->m6b) | -0.373 | -0.167 |
-0.27 |
hsa-miR-4433-3p |
ttcccCTCCTGacagccca |
0 | ACAGGAGU | m6b | Created | no TS | -0.085 |
0.03 |
hsa-miR-4459 |
ttccCCTCCTGacagccca |
0 | CCAGGAGG | m7b | Created | no TS | -0.309 |
-1.35 |
hsa-miR-4695-5p |
ttccCCTCCTGacagccca |
0 | CAGGAGGC | m7a | Created | NA | NA |
-1.99 |
hsa-miR-4728-5p |
ttcCCCTCCCgacagccca |
2 |
UGGGAGGG | m7b | (m7b->m6b) | -0.382 | -0.167 |
-0.57 |
hsa-miR-4768-3p |
ttcccCTCCTGacagccca |
0 | CCAGGAGA | m6b | Created | no TS | -0.079 |
-1.11 |
hsa-miR-4779 |
ttcCCCTCCTgacagccca |
0 | UAGGAGGG | m7b | (m6b->m7b) | -0.152 | -0.304 |
-0.13 |