SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001101654 |
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Gene Symbol: | CXXC1 |
Description: | Homo sapiens CXXC finger protein 1 (CXXC1), transcript variant 1, mRNA. |
Gene Location: | chr18(-):47808712-47814692 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr18:g.50282436C>T | COSN1082141 | TCGA-BS-A0UF-01 | [endometrium][NS][carcinoma][endometrioid_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-505-3p |
tgtccccGTTGACatgttc |
0 | CGUCAACA | m6b | Created | no TS | -0.087000 |
-0.670000 |
hsa-miR-95 |
tgtccCCGTTGAcatgttc |
0 | UUCAACGG | m7b | Created | no TS | -0.180000 |
0.210000 |
hsa-miR-505-3p |
tgtccccGTTGACatgttc |
0 | CGUCAACA | m6b | Created | no TS | -0.087000 |
-0.670000 |
hsa-miR-95 |
tgtccCCGTTGAcatgttc |
0 | UUCAACGG | m7b | Created | no TS | -0.180000 |
0.210000 |
hsa-miR-505-3p |
tgtccccGTTGACatgttc |
0 | CGUCAACA | m6b | Created | no TS | -0.087 |
-0.67 |
hsa-miR-95 |
tgtccCCGTTGAcatgttc |
0 | UUCAACGG | m7b | Created | no TS | -0.18 |
0.21 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr18:g.50282502C>T | COSN1082139 | TCGA-BS-A0UV-01 | [endometrium][NS][carcinoma][endometrioid_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3919 |
ctgtTTCTCTGgttctccc |
0 | GCAGAGAA | m7b | Created | no TS | -0.103000 |
-8.100000 |
hsa-miR-3919 |
ctgtTTCTCTGgttctccc |
0 | GCAGAGAA | m7b | Created | no TS | -0.103000 |
-8.100000 |
hsa-miR-3919 |
ctgtTTCTCTGgttctccc |
0 | GCAGAGAA | m7b | Created | no TS | -0.103 |
-8.1 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr18:g.50282579G>T | COSN2382141 | TCGA-D1-A15Z-01 | [endometrium][NS][carcinoma][endometrioid_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-615-5p |
cctggcccGGACCCCttac |
2 |
GGGGGUCC | m7b | Disrupted | 0.000000 | no TS | No effect |
hsa-miR-615-5p |
cctggcccGGACCCCttac |
2 |
GGGGGUCC | m7b | Disrupted | 0.000000 | no TS | No effect |
hsa-miR-615-5p |
cctggcccGGACCCCttac |
0 | GGGGGUCC | m7b | Disrupted | 0 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr18:g.50282580G>A | COSN1082137 | TCGA-D1-A17Q-01 | [endometrium][NS][carcinoma][endometrioid_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3187-5p |
tcctgGCCCAGacccctta |
0 | CCUGGGCA | m6b | Created | no TS | 0.000000 |
3.040000 |
hsa-miR-378g |
tcctgGCCCAGacccctta |
0 | ACUGGGCU | m6b | Created | no TS | 0.000000 | No effect |
hsa-miR-4486 |
tcctgGCCCAGacccctta |
0 | GCUGGGCG | m6b | Created | no TS | 0.000000 |
2.330000 |
hsa-miR-4640-5p |
tcCTGGCCCAgacccctta |
3 |
UGGGCCAG | m8a | (m7b->m8a) | 0.000000 | 0.000000 | No effect |
hsa-miR-612 |
tcctgGCCCAGacccctta |
0 | GCUGGGCA | m6b | Created | no TS | 0.000000 |
2.770000 |
hsa-miR-615-5p |
tcctggcccGGACCCCtta |
2 |
GGGGGUCC | m7b | (m7b->m6b) | 0.000000 | no TS | No effect |
hsa-miR-3187-5p |
tcctgGCCCAGacccctta |
0 | CCUGGGCA | m6b | Created | no TS | 0.000000 |
3.040000 |
hsa-miR-378g |
tcctgGCCCAGacccctta |
0 | ACUGGGCU | m6b | Created | no TS | 0.000000 | No effect |
hsa-miR-4486 |
tcctgGCCCAGacccctta |
0 | GCUGGGCG | m6b | Created | no TS | 0.000000 |
2.330000 |
hsa-miR-4640-5p |
tcCTGGCCCAgacccctta |
3 |
UGGGCCAG | m8a | (m7b->m8a) | 0.000000 | 0.000000 | No effect |
hsa-miR-612 |
tcctgGCCCAGacccctta |
0 | GCUGGGCA | m6b | Created | no TS | 0.000000 |
2.770000 |
hsa-miR-615-5p |
tcctggcccGGACCCCtta |
2 |
GGGGGUCC | m7b | (m7b->m6b) | 0.000000 | no TS | No effect |
hsa-miR-3187-5p |
tcctgGCCCAGacccctta |
0 | CCUGGGCA | m6b | Created | no TS | 0 |
3.04 |
hsa-miR-378g |
tcctgGCCCAGacccctta |
0 | ACUGGGCU | m6b | Created | no TS | 0 | No effect |
hsa-miR-4486 |
tcctgGCCCAGacccctta |
0 | GCUGGGCG | m6b | Created | no TS | 0 |
2.33 |
hsa-miR-4640-5p |
tcCTGGCCCAgacccctta |
0 | UGGGCCAG | m8a | (m7b->m8a) | 0 | 0 | No effect |
hsa-miR-612 |
tcctgGCCCAGacccctta |
0 | GCUGGGCA | m6b | Created | no TS | 0 |
2.77 |
hsa-miR-615-5p |
tcctggcccGGACCCCtta |
0 | GGGGGUCC | m7b | (m7b->m6b) | 0 | no TS | No effect |