SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001101654
Gene Symbol: CXXC1
Description: Homo sapiens CXXC finger protein 1 (CXXC1), transcript variant 1, mRNA.
Gene Location: chr18(-):47808712-47814692
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr18:g.50282436C>T COSN1082141 TCGA-BS-A0UF-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-505-3p tgtccccGTTGACatgttc
0 CGUCAACA m6b Created no TS -0.087000 -0.670000
hsa-miR-95 tgtccCCGTTGAcatgttc
0 UUCAACGG m7b Created no TS -0.180000 0.210000
hsa-miR-505-3p tgtccccGTTGACatgttc
0 CGUCAACA m6b Created no TS -0.087000 -0.670000
hsa-miR-95 tgtccCCGTTGAcatgttc
0 UUCAACGG m7b Created no TS -0.180000 0.210000
hsa-miR-505-3p tgtccccGTTGACatgttc
0 CGUCAACA m6b Created no TS -0.087 -0.67
hsa-miR-95 tgtccCCGTTGAcatgttc
0 UUCAACGG m7b Created no TS -0.18 0.21

Mutation Mutation ID Sample Name Cancer Type
chr18:g.50282502C>T COSN1082139 TCGA-BS-A0UV-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3919 ctgtTTCTCTGgttctccc
0 GCAGAGAA m7b Created no TS -0.103000 -8.100000
hsa-miR-3919 ctgtTTCTCTGgttctccc
0 GCAGAGAA m7b Created no TS -0.103000 -8.100000
hsa-miR-3919 ctgtTTCTCTGgttctccc
0 GCAGAGAA m7b Created no TS -0.103 -8.1

Mutation Mutation ID Sample Name Cancer Type
chr18:g.50282579G>T COSN2382141 TCGA-D1-A15Z-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-615-5p cctggcccGGACCCCttac
2
GGGGGUCC m7b Disrupted 0.000000 no TS No effect
hsa-miR-615-5p cctggcccGGACCCCttac
2
GGGGGUCC m7b Disrupted 0.000000 no TS No effect
hsa-miR-615-5p cctggcccGGACCCCttac
0 GGGGGUCC m7b Disrupted 0 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr18:g.50282580G>A COSN1082137 TCGA-D1-A17Q-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3187-5p tcctgGCCCAGacccctta
0 CCUGGGCA m6b Created no TS 0.000000 3.040000
hsa-miR-378g tcctgGCCCAGacccctta
0 ACUGGGCU m6b Created no TS 0.000000 No effect
hsa-miR-4486 tcctgGCCCAGacccctta
0 GCUGGGCG m6b Created no TS 0.000000 2.330000
hsa-miR-4640-5p tcCTGGCCCAgacccctta
3
UGGGCCAG m8a (m7b->m8a) 0.000000 0.000000 No effect
hsa-miR-612 tcctgGCCCAGacccctta
0 GCUGGGCA m6b Created no TS 0.000000 2.770000
hsa-miR-615-5p tcctggcccGGACCCCtta
2
GGGGGUCC m7b (m7b->m6b) 0.000000 no TS No effect
hsa-miR-3187-5p tcctgGCCCAGacccctta
0 CCUGGGCA m6b Created no TS 0.000000 3.040000
hsa-miR-378g tcctgGCCCAGacccctta
0 ACUGGGCU m6b Created no TS 0.000000 No effect
hsa-miR-4486 tcctgGCCCAGacccctta
0 GCUGGGCG m6b Created no TS 0.000000 2.330000
hsa-miR-4640-5p tcCTGGCCCAgacccctta
3
UGGGCCAG m8a (m7b->m8a) 0.000000 0.000000 No effect
hsa-miR-612 tcctgGCCCAGacccctta
0 GCUGGGCA m6b Created no TS 0.000000 2.770000
hsa-miR-615-5p tcctggcccGGACCCCtta
2
GGGGGUCC m7b (m7b->m6b) 0.000000 no TS No effect
hsa-miR-3187-5p tcctgGCCCAGacccctta
0 CCUGGGCA m6b Created no TS 0 3.04
hsa-miR-378g tcctgGCCCAGacccctta
0 ACUGGGCU m6b Created no TS 0 No effect
hsa-miR-4486 tcctgGCCCAGacccctta
0 GCUGGGCG m6b Created no TS 0 2.33
hsa-miR-4640-5p tcCTGGCCCAgacccctta
0 UGGGCCAG m8a (m7b->m8a) 0 0 No effect
hsa-miR-612 tcctgGCCCAGacccctta
0 GCUGGGCA m6b Created no TS 0 2.77
hsa-miR-615-5p tcctggcccGGACCCCtta
0 GGGGGUCC m7b (m7b->m6b) 0 no TS No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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