SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_005808
Gene Symbol: CTDSPL
Description: Homo sapiens CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like (CTDSPL), transcript variant 1, mRNA.
Gene Location: chr3(+):37903668-38025960
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr3:g.37980990A>G COSN15326632 0077_CRUK_PC_0077_T1_DNA [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-181a-5p acagggTGAATGTggccat
16
AACAUUCA m7b Disrupted -0.234000 -0.223000 No effect
hsa-miR-181b-5p acagggTGAATGTggccat
16
AACAUUCA m7b Disrupted -0.234000 -0.223000 No effect
hsa-miR-181c-5p acagggTGAATGTggccat
16
AACAUUCA m7b Disrupted -0.211000 -0.200000 -0.020000
hsa-miR-181d acagggTGAATGTggccat
16
AACAUUCA m7b Disrupted -0.234000 -0.232000 No effect
hsa-miR-4262 acagggTGAATGTggccat
16
GACAUUCA m7b Disrupted -0.207000 -0.205000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr3:g.37981231G>A COSN8489158 J30_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3940-5p agagcagctAACCCAactc
0 GUGGGUUG m6b Created no TS -0.089000 -2.370000
hsa-miR-4507 agagcagctAACCCAactc
0 CUGGGUUG m6b Created no TS -0.082000 -4.540000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.37981452C>G COSN1276604 HX14T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1228-5p gagcctgtCGCCCAacagg
0 GUGGGCGG m6b Created no TS -0.162000 No effect
hsa-miR-1273a gagccTGTCGCCCaacagg
0 GGGCGACA m8a Created no TS -0.174000 0.640000
hsa-miR-1275 gagcctgTCCCCCAacagg
2
GUGGGGGA m7b Disrupted -0.522000 -0.249000 No effect
hsa-miR-3147 gagcctgtcGCCCAACagg
8
GGUUGGGC m7b (m6c->m7b) -0.068000 -0.262000 No effect
hsa-miR-4525 gagcctgTCCCCCaacagg
3
GGGGGGAU m6b Disrupted -0.274000 -0.140000 No effect
hsa-miR-4649-5p gagcctgTCGCCCAacagg
0 UGGGCGAG m7a Created no TS -0.186000 No effect
hsa-miR-4665-5p gagcctgTCCCCCAacagg
2
CUGGGGGA m7b Disrupted -0.462000 -0.231000 No effect
hsa-miR-4723-5p gagcctgTCCCCCAacagg
3
UGGGGGAG m7a Disrupted -0.444000 -0.328000 No effect
hsa-miR-5010-5p gagcctgTCCCCCaacagg
3
AGGGGGAU m6b Disrupted -0.268000 -0.137000 No effect
hsa-miR-5572 gagcctgtcCCCCAACagg
3
GUUGGGGU m7a (m7a->m6b) 0.008000 0.008000 No effect
hsa-miR-5698 gagcctgTCCCCCAacagg
3
UGGGGGAG m7a Disrupted -0.489000 -0.359000 No effect
hsa-miR-625-5p gagcctgTCCCCCaacagg
3
AGGGGGAA m6b Disrupted -0.254000 -0.130000 No effect
hsa-miR-1228-5p gagcctgtCGCCCAacagg
0 GUGGGCGG m6b Created no TS -0.162 -8.09
hsa-miR-1273a gagccTGTCGCCCaacagg
0 GGGCGACA m8a Created no TS -0.174 0.64
hsa-miR-1275 gagcctgTCCCCCAacagg
2
GUGGGGGA m7b Disrupted -0.522 -0.249 No effect
hsa-miR-3147 gagcctgtcGCCCAACagg
0 GGUUGGGC m7b (m6c->m7b) -0.068 -0.262 No effect
hsa-miR-4525 gagcctgTCCCCCaacagg
3
GGGGGGAU m6b Disrupted -0.274 -0.14 No effect
hsa-miR-4649-5p gagcctgTCGCCCAacagg
0 UGGGCGAG m7a Created no TS -0.186 No effect
hsa-miR-4665-5p gagcctgTCCCCCAacagg
2
CUGGGGGA m7b Disrupted -0.462 -0.231 No effect
hsa-miR-4723-5p gagcctgTCCCCCAacagg
3
UGGGGGAG m7a Disrupted -0.444 -0.328 No effect
hsa-miR-5010-5p gagcctgTCCCCCaacagg
3
AGGGGGAU m6b Disrupted -0.268 -0.137 No effect
hsa-miR-5572 gagcctgtcCCCCAACagg
0 GUUGGGGU m7a (m7a->m6b) 0.008 0.008 No effect
hsa-miR-5698 gagcctgTCCCCCAacagg
3
UGGGGGAG m7a Disrupted -0.489 -0.359 No effect
hsa-miR-625-5p gagcctgTCCCCCaacagg
3
AGGGGGAA m6b Disrupted -0.254 -0.13 No effect

Mutation Mutation ID Sample Name Cancer Type
chr3:g.37981546A>T 9_84890 CRC-8-Tumor Colorectal adenocarcinoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3662 tctccacTCATTTTtgacc
7
GAAAAUGA m7b Disrupted 0.249 0.144 2.32
hsa-miR-4745-5p tctCCACTCAtttttgacc
6
UGAGUGGG m7a (m7a->m6a) -0.104 no TS -0.04
hsa-miR-4758-5p tctCCACTCAtttttgacc
6
GUGAGUGG m7b (m7b->m6b) -0.183 no TS 0.63


Mutation Mutation ID Sample Name Cancer Type
chr3:g.37982078G>A COSN6767369 RK171_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.37982591C>T COSN1276605 HCC121T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1265 caattACATCCTcccaaca
2
CAGGAUGU m7b Disrupted -0.051000 -0.075000 No effect
hsa-miR-149-3p caattacatCCTCCCaaca
2
AGGGAGGG m6b Disrupted -0.171000 -0.161000 No effect
hsa-miR-30b-3p caattacatCCTCCCAaca
3
CUGGGAGG m7b (m7b->m6c) -0.124000 -0.029000 0.030000
hsa-miR-30c-1-3p caattacatTCTCCCAaca
3
CUGGGAGA m7b (m6c->m7b) -0.192000 -0.238000 No effect
hsa-miR-30c-2-3p caattacatTCTCCCAaca
3
CUGGGAGA m7b (m6c->m7b) -0.205000 -0.251000 -0.010000
hsa-miR-3605-5p caattaCATCCTCccaaca
2
UGAGGAUG m7b Disrupted -0.027000 no TS No effect
hsa-miR-3689a-3p caattacatCCTCCCAaca
3
CUGGGAGG m7b (m7b->m6c) -0.093000 -0.012000 0.200000
hsa-miR-3689b-3p caattacatCCTCCCAaca
3
CUGGGAGG m7b (m7b->m6c) -0.114000 -0.019000 0.090000
hsa-miR-3689c caattacatCCTCCCAaca
3
CUGGGAGG m7b (m7b->m6c) -0.114000 -0.019000 0.090000
hsa-miR-4516 caattacaTTCTCCCaaca
4
GGGAGAAG m7a Created 0.011000 0.011000 No effect
hsa-miR-4728-5p caattacatCCTCCCAaca
2
UGGGAGGG m7a (m7a->m6b) -0.191000 -0.171000 No effect
hsa-miR-1265 caattACATCCTcccaaca
2
CAGGAUGU m7b Disrupted -0.051000 -0.075000 No effect
hsa-miR-149-3p caattacatCCTCCCaaca
2
AGGGAGGG m6b Disrupted -0.171000 -0.161000 No effect
hsa-miR-30b-3p caattacatCCTCCCAaca
3
CUGGGAGG m7b (m7b->m6c) -0.124000 -0.029000 0.030000
hsa-miR-30c-1-3p caattacatTCTCCCAaca
3
CUGGGAGA m7b (m6c->m7b) -0.192000 -0.238000 No effect
hsa-miR-30c-2-3p caattacatTCTCCCAaca
3
CUGGGAGA m7b (m6c->m7b) -0.205000 -0.251000 -0.010000
hsa-miR-3605-5p caattaCATCCTCccaaca
2
UGAGGAUG m7b Disrupted -0.027000 no TS No effect
hsa-miR-3689a-3p caattacatCCTCCCAaca
3
CUGGGAGG m7b (m7b->m6c) -0.093000 -0.012000 0.200000
hsa-miR-3689b-3p caattacatCCTCCCAaca
3
CUGGGAGG m7b (m7b->m6c) -0.114000 -0.019000 0.090000
hsa-miR-3689c caattacatCCTCCCAaca
3
CUGGGAGG m7b (m7b->m6c) -0.114000 -0.019000 0.090000
hsa-miR-4516 caattacaTTCTCCCaaca
4
GGGAGAAG m7a Created 0.011000 0.011000 No effect
hsa-miR-4728-5p caattacatCCTCCCAaca
2
UGGGAGGG m7a (m7a->m6b) -0.191000 -0.171000 No effect
hsa-miR-1265 caattACATCCTcccaaca
2
CAGGAUGU m7b Disrupted -0.051 -0.075 No effect
hsa-miR-149-3p caattacatCCTCCCaaca
0 AGGGAGGG m6b Disrupted -0.171 -0.161 No effect
hsa-miR-30b-3p caattacatCCTCCCAaca
0 CUGGGAGG m7b (m7b->m6c) -0.124 -0.029 0.03
hsa-miR-30c-1-3p caattacatTCTCCCAaca
0 CUGGGAGA m7b (m6c->m7b) -0.192 -0.238 No effect
hsa-miR-30c-2-3p caattacatTCTCCCAaca
0 CUGGGAGA m7b (m6c->m7b) -0.205 -0.251 -0.01
hsa-miR-3605-5p caattaCATCCTCccaaca
2
UGAGGAUG m7b Disrupted -0.027 no TS No effect
hsa-miR-3689a-3p caattacatCCTCCCAaca
0 CUGGGAGG m7b (m7b->m6c) -0.093 -0.012 0.2
hsa-miR-3689b-3p caattacatCCTCCCAaca
0 CUGGGAGG m7b (m7b->m6c) -0.114 -0.019 0.09
hsa-miR-3689c caattacatCCTCCCAaca
0 CUGGGAGG m7b (m7b->m6c) -0.114 -0.019 0.09
hsa-miR-4516 caattacaTTCTCCCaaca
0 GGGAGAAG m7a Created 0.011 0.011 No effect
hsa-miR-4728-5p caattacatCCTCCCAaca
0 UGGGAGGG m7a (m7a->m6b) -0.191 -0.171 No effect

Mutation Mutation ID Sample Name Cancer Type
chr3:g.37982929C>T COSN8489159 1287_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3065-5p tgcccccTTTGTTGgcatc
0 UCAACAAA m7b Created -0.050000 0.188000 No effect
hsa-miR-3179 tgcCCCCTTCgttggcatc
0 AGAAGGGG m7b (m7b->m6b) -0.128000 -0.168000 0.830000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.37984111G>C COSN1276606 HCC39T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-198 tgctgtgCTGGACagttgg
1
GGUCCAGA m6b Disrupted -0.292000 -0.181000 No effect
hsa-miR-4530 tgctgTGCTGGacagttgg
3
CCCAGCAG m6b Disrupted -0.520000 -0.429000 No effect
hsa-miR-198 tgctgtgCTGGACagttgg
1
GGUCCAGA m6b Disrupted -0.292000 -0.181000 No effect
hsa-miR-4530 tgctgTGCTGGacagttgg
3
CCCAGCAG m6b Disrupted -0.520000 -0.429000 No effect
hsa-miR-198 tgctgtgCTGGACagttgg
1
GGUCCAGA m6b Disrupted -0.292000 -0.181000 No effect
hsa-miR-4530 tgctgTGCTGGacagttgg
3
CCCAGCAG m6b Disrupted -0.520000 -0.429000 No effect
hsa-miR-198 tgctgtgCTGGACagttgg
5
GGUCCAGA m6b Disrupted -0.292 -0.181 No effect
hsa-miR-4530 tgctgTGCTGGacagttgg
5
CCCAGCAG m6b Disrupted -0.52 -0.429 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
37982929 rs11709029 C C hsa-miR-3179
2
CCCCTTCgttggc
Disrupted
N
0.04
T hsa-miR-3065-5p
2
ccccTTTGTTGgc
Created
N
0.238
37983522 rs1064192 C C hsa-miR-1275
hsa-miR-4665-5p
hsa-miR-503-3p
hsa-miR-6751-5p
hsa-miR-6752-5p
hsa-miR-6803-5p
hsa-miR-6835-5p
hsa-miR-6842-5p
hsa-miR-7109-5p
hsa-miR-7110-5p
2
2
2
2
2
2
2
2
2
2
aaataCCCCCAAc
aaataCCCCCAAc
aAATACCCccaac
aaatACCCCCAAc
aaatACCCCCAac
aaatACCCCCAAc
aaaTACCCCCAac
aaatACCCCCAac
aaataCCCCCAAc
aaatACCCCCAac
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
N
N
N
N
N
-0.119
-0.119
-0.062
-0.343
-0.134
-0.29
-0.336
-0.137
-0.12
-0.134
G hsa-miR-1228-5p
hsa-miR-1268a
hsa-miR-1268b
hsa-miR-3147
hsa-miR-585-3p
2
2
2
3
2
aaataCGCCCAAc
aaatACGCCCAac
aaatACGCCCAac
aaatacGCCCAAC
aaaTACGCCCAac
Created
Created
Created
Created
Created
N
N
N
N
N
-0.182
-0.188
-0.188
-0.149
-0.415
37984244 rs184292727 C C hsa-miR-1343-3p
hsa-miR-30c-1-3p
hsa-miR-30c-2-3p
hsa-miR-3192-5p
hsa-miR-6731-5p
hsa-miR-6742-3p
hsa-miR-6783-3p
hsa-miR-6788-5p
hsa-miR-6852-5p
hsa-miR-6878-5p
hsa-miR-8085
hsa-miR-939-3p
13
11
11
12
11
13
13
11
13
11
11
13
attctCCCAGGAg
atTCTCCCAggag
atTCTCCCAggag
attCTCCCAGgag
atTCTCCCAggag
attctCCCAGGAg
attctCCCAGGAg
atTCTCCCAggag
attctCCCAGGAg
aTTCTCCCAggag
atTCTCCCAggag
attctCCCAGGAg
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
N
N
N
N
N
N
N
-0.188
-0.149
-0.149
-0.197
-0.107
-0.124
-0.17
-0.168
-0.127
-0.29
-0.107
-0.119
T hsa-miR-1200
hsa-miR-3123
hsa-miR-4324
hsa-miR-544b
hsa-miR-6761-5p
13
8
13
13
12
attctCTCAGGAg
ATTCTCTcaggag
attcTCTCAGGAg
attctCTCAGGAg
attCTCTCAGgag
Created
Created
Created
Created
Created
N
N
N
N
N
-0.153
-0.013
-0.296
-0.089
-0.166
37984275 rs190465310 C C hsa-miR-1275
hsa-miR-149-3p
hsa-miR-4447
hsa-miR-4472
hsa-miR-4525
hsa-miR-4665-5p
hsa-miR-4723-5p
hsa-miR-4728-5p
hsa-miR-5010-5p
hsa-miR-5698
hsa-miR-625-5p
hsa-miR-6785-5p
hsa-miR-6804-5p
hsa-miR-6825-5p
hsa-miR-6870-5p
hsa-miR-6883-5p
hsa-miR-7111-5p
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
cacccTCCCCCAc
caCCCTCCCccac
caccctCCCCCAC
caccctCCCCCAC
cacccTCCCCCAc
cacccTCCCCCAc
caccCTCCCCCAc
caCCCTCCCccac
cacccTCCCCCAc
caccCTCCCCCAc
cacccTCCCCCAc
caCCCTCCCccac
CACCCTCccccac
cacCCTCCCCcac
caccCTCCCCCAc
caCCCTCCCccac
caccCTCCCCCAc
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
-0.13
-0.161
-0.188
-0.188
-0.14
-0.112
-0.328
-0.171
-0.137
-0.359
-0.13
-0.152
-0.169
-0.178
-0.338
-0.161
-0.349
T hsa-miR-2110
hsa-miR-3202
hsa-miR-4271
hsa-miR-4725-3p
hsa-miR-4747-5p
hsa-miR-491-5p
hsa-miR-5196-5p
hsa-miR-6780b-5p
2
2
2
2
2
2
2
2
cacccTTCCCCAc
caCCCTTCCccac
caccCTTCCCCAc
caccCTTCCCCAc
cacCCTTCCCcac
caccctTCCCCAC
cacCCTTCCCcac
caccCTTCCCCAc
Created
Created
Created
Created
Created
Created
Created
Created
N
N
N
N
N
N
N
N
-0.039
-0.131
-0.263
-0.295
-0.112
-0.132
-0.102
-0.253

Genome Browser