SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_005808 |
---|---|
Gene Symbol: | CTDSPL |
Description: | Homo sapiens CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like (CTDSPL), transcript variant 1, mRNA. |
Gene Location: | chr3(+):37903668-38025960 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.37980990A>G | COSN15326632 | 0077_CRUK_PC_0077_T1_DNA | [prostate][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-181a-5p |
acagggTGAATGTggccat |
16 |
AACAUUCA | m7b | Disrupted | -0.234000 | -0.223000 | No effect | |
hsa-miR-181b-5p |
acagggTGAATGTggccat |
16 |
AACAUUCA | m7b | Disrupted | -0.234000 | -0.223000 | No effect | |
hsa-miR-181c-5p |
acagggTGAATGTggccat |
16 |
AACAUUCA | m7b | Disrupted | -0.211000 | -0.200000 |
-0.020000 |
|
hsa-miR-181d |
acagggTGAATGTggccat |
16 |
AACAUUCA | m7b | Disrupted | -0.234000 | -0.232000 | No effect | |
hsa-miR-4262 |
acagggTGAATGTggccat |
16 |
GACAUUCA | m7b | Disrupted | -0.207000 | -0.205000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.37981231G>A | COSN8489158 | J30_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3940-5p |
agagcagctAACCCAactc |
0 | GUGGGUUG | m6b | Created | no TS | -0.089000 |
-2.370000 |
|
hsa-miR-4507 |
agagcagctAACCCAactc |
0 | CUGGGUUG | m6b | Created | no TS | -0.082000 |
-4.540000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.37981452C>G | COSN1276604 | HX14T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1228-5p |
gagcctgtCGCCCAacagg |
0 | GUGGGCGG | m6b | Created | no TS | -0.162000 | No effect | |
hsa-miR-1273a |
gagccTGTCGCCCaacagg |
0 | GGGCGACA | m8a | Created | no TS | -0.174000 |
0.640000 |
|
hsa-miR-1275 |
gagcctgTCCCCCAacagg |
2 |
GUGGGGGA | m7b | Disrupted | -0.522000 | -0.249000 | No effect | |
hsa-miR-3147 |
gagcctgtcGCCCAACagg |
8 |
GGUUGGGC | m7b | (m6c->m7b) | -0.068000 | -0.262000 | No effect | |
hsa-miR-4525 |
gagcctgTCCCCCaacagg |
3 |
GGGGGGAU | m6b | Disrupted | -0.274000 | -0.140000 | No effect | |
hsa-miR-4649-5p |
gagcctgTCGCCCAacagg |
0 | UGGGCGAG | m7a | Created | no TS | -0.186000 | No effect | |
hsa-miR-4665-5p |
gagcctgTCCCCCAacagg |
2 |
CUGGGGGA | m7b | Disrupted | -0.462000 | -0.231000 | No effect | |
hsa-miR-4723-5p |
gagcctgTCCCCCAacagg |
3 |
UGGGGGAG | m7a | Disrupted | -0.444000 | -0.328000 | No effect | |
hsa-miR-5010-5p |
gagcctgTCCCCCaacagg |
3 |
AGGGGGAU | m6b | Disrupted | -0.268000 | -0.137000 | No effect | |
hsa-miR-5572 |
gagcctgtcCCCCAACagg |
3 |
GUUGGGGU | m7a | (m7a->m6b) | 0.008000 | 0.008000 | No effect | |
hsa-miR-5698 |
gagcctgTCCCCCAacagg |
3 |
UGGGGGAG | m7a | Disrupted | -0.489000 | -0.359000 | No effect | |
hsa-miR-625-5p |
gagcctgTCCCCCaacagg |
3 |
AGGGGGAA | m6b | Disrupted | -0.254000 | -0.130000 | No effect | |
hsa-miR-1228-5p |
gagcctgtCGCCCAacagg |
0 | GUGGGCGG | m6b | Created | no TS | -0.162 |
-8.09 |
|
hsa-miR-1273a |
gagccTGTCGCCCaacagg |
0 | GGGCGACA | m8a | Created | no TS | -0.174 |
0.64 |
|
hsa-miR-1275 |
gagcctgTCCCCCAacagg |
2 |
GUGGGGGA | m7b | Disrupted | -0.522 | -0.249 | No effect | |
hsa-miR-3147 |
gagcctgtcGCCCAACagg |
0 | GGUUGGGC | m7b | (m6c->m7b) | -0.068 | -0.262 | No effect | |
hsa-miR-4525 |
gagcctgTCCCCCaacagg |
3 |
GGGGGGAU | m6b | Disrupted | -0.274 | -0.14 | No effect | |
hsa-miR-4649-5p |
gagcctgTCGCCCAacagg |
0 | UGGGCGAG | m7a | Created | no TS | -0.186 | No effect | |
hsa-miR-4665-5p |
gagcctgTCCCCCAacagg |
2 |
CUGGGGGA | m7b | Disrupted | -0.462 | -0.231 | No effect | |
hsa-miR-4723-5p |
gagcctgTCCCCCAacagg |
3 |
UGGGGGAG | m7a | Disrupted | -0.444 | -0.328 | No effect | |
hsa-miR-5010-5p |
gagcctgTCCCCCaacagg |
3 |
AGGGGGAU | m6b | Disrupted | -0.268 | -0.137 | No effect | |
hsa-miR-5572 |
gagcctgtcCCCCAACagg |
0 | GUUGGGGU | m7a | (m7a->m6b) | 0.008 | 0.008 | No effect | |
hsa-miR-5698 |
gagcctgTCCCCCAacagg |
3 |
UGGGGGAG | m7a | Disrupted | -0.489 | -0.359 | No effect | |
hsa-miR-625-5p |
gagcctgTCCCCCaacagg |
3 |
AGGGGGAA | m6b | Disrupted | -0.254 | -0.13 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.37981546A>T | 9_84890 | CRC-8-Tumor | Colorectal adenocarcinoma | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3662 |
tctccacTCATTTTtgacc |
7 |
GAAAAUGA | m7b | Disrupted | 0.249 | 0.144 |
2.32 |
|
hsa-miR-4745-5p |
tctCCACTCAtttttgacc |
6 |
UGAGUGGG | m7a | (m7a->m6a) | -0.104 | no TS |
-0.04 |
|
hsa-miR-4758-5p |
tctCCACTCAtttttgacc |
6 |
GUGAGUGG | m7b | (m7b->m6b) | -0.183 | no TS |
0.63 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.37982078G>A | COSN6767369 | RK171_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.37982591C>T | COSN1276605 | HCC121T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1265 |
caattACATCCTcccaaca |
2 |
CAGGAUGU | m7b | Disrupted | -0.051000 | -0.075000 | No effect | |
hsa-miR-149-3p |
caattacatCCTCCCaaca |
2 |
AGGGAGGG | m6b | Disrupted | -0.171000 | -0.161000 | No effect | |
hsa-miR-30b-3p |
caattacatCCTCCCAaca |
3 |
CUGGGAGG | m7b | (m7b->m6c) | -0.124000 | -0.029000 |
0.030000 |
|
hsa-miR-30c-1-3p |
caattacatTCTCCCAaca |
3 |
CUGGGAGA | m7b | (m6c->m7b) | -0.192000 | -0.238000 | No effect | |
hsa-miR-30c-2-3p |
caattacatTCTCCCAaca |
3 |
CUGGGAGA | m7b | (m6c->m7b) | -0.205000 | -0.251000 |
-0.010000 |
|
hsa-miR-3605-5p |
caattaCATCCTCccaaca |
2 |
UGAGGAUG | m7b | Disrupted | -0.027000 | no TS | No effect | |
hsa-miR-3689a-3p |
caattacatCCTCCCAaca |
3 |
CUGGGAGG | m7b | (m7b->m6c) | -0.093000 | -0.012000 |
0.200000 |
|
hsa-miR-3689b-3p |
caattacatCCTCCCAaca |
3 |
CUGGGAGG | m7b | (m7b->m6c) | -0.114000 | -0.019000 |
0.090000 |
|
hsa-miR-3689c |
caattacatCCTCCCAaca |
3 |
CUGGGAGG | m7b | (m7b->m6c) | -0.114000 | -0.019000 |
0.090000 |
|
hsa-miR-4516 |
caattacaTTCTCCCaaca |
4 |
GGGAGAAG | m7a | Created | 0.011000 | 0.011000 | No effect | |
hsa-miR-4728-5p |
caattacatCCTCCCAaca |
2 |
UGGGAGGG | m7a | (m7a->m6b) | -0.191000 | -0.171000 | No effect | |
hsa-miR-1265 |
caattACATCCTcccaaca |
2 |
CAGGAUGU | m7b | Disrupted | -0.051000 | -0.075000 | No effect | |
hsa-miR-149-3p |
caattacatCCTCCCaaca |
2 |
AGGGAGGG | m6b | Disrupted | -0.171000 | -0.161000 | No effect | |
hsa-miR-30b-3p |
caattacatCCTCCCAaca |
3 |
CUGGGAGG | m7b | (m7b->m6c) | -0.124000 | -0.029000 |
0.030000 |
|
hsa-miR-30c-1-3p |
caattacatTCTCCCAaca |
3 |
CUGGGAGA | m7b | (m6c->m7b) | -0.192000 | -0.238000 | No effect | |
hsa-miR-30c-2-3p |
caattacatTCTCCCAaca |
3 |
CUGGGAGA | m7b | (m6c->m7b) | -0.205000 | -0.251000 |
-0.010000 |
|
hsa-miR-3605-5p |
caattaCATCCTCccaaca |
2 |
UGAGGAUG | m7b | Disrupted | -0.027000 | no TS | No effect | |
hsa-miR-3689a-3p |
caattacatCCTCCCAaca |
3 |
CUGGGAGG | m7b | (m7b->m6c) | -0.093000 | -0.012000 |
0.200000 |
|
hsa-miR-3689b-3p |
caattacatCCTCCCAaca |
3 |
CUGGGAGG | m7b | (m7b->m6c) | -0.114000 | -0.019000 |
0.090000 |
|
hsa-miR-3689c |
caattacatCCTCCCAaca |
3 |
CUGGGAGG | m7b | (m7b->m6c) | -0.114000 | -0.019000 |
0.090000 |
|
hsa-miR-4516 |
caattacaTTCTCCCaaca |
4 |
GGGAGAAG | m7a | Created | 0.011000 | 0.011000 | No effect | |
hsa-miR-4728-5p |
caattacatCCTCCCAaca |
2 |
UGGGAGGG | m7a | (m7a->m6b) | -0.191000 | -0.171000 | No effect | |
hsa-miR-1265 |
caattACATCCTcccaaca |
2 |
CAGGAUGU | m7b | Disrupted | -0.051 | -0.075 | No effect | |
hsa-miR-149-3p |
caattacatCCTCCCaaca |
0 | AGGGAGGG | m6b | Disrupted | -0.171 | -0.161 | No effect | |
hsa-miR-30b-3p |
caattacatCCTCCCAaca |
0 | CUGGGAGG | m7b | (m7b->m6c) | -0.124 | -0.029 |
0.03 |
|
hsa-miR-30c-1-3p |
caattacatTCTCCCAaca |
0 | CUGGGAGA | m7b | (m6c->m7b) | -0.192 | -0.238 | No effect | |
hsa-miR-30c-2-3p |
caattacatTCTCCCAaca |
0 | CUGGGAGA | m7b | (m6c->m7b) | -0.205 | -0.251 |
-0.01 |
|
hsa-miR-3605-5p |
caattaCATCCTCccaaca |
2 |
UGAGGAUG | m7b | Disrupted | -0.027 | no TS | No effect | |
hsa-miR-3689a-3p |
caattacatCCTCCCAaca |
0 | CUGGGAGG | m7b | (m7b->m6c) | -0.093 | -0.012 |
0.2 |
|
hsa-miR-3689b-3p |
caattacatCCTCCCAaca |
0 | CUGGGAGG | m7b | (m7b->m6c) | -0.114 | -0.019 |
0.09 |
|
hsa-miR-3689c |
caattacatCCTCCCAaca |
0 | CUGGGAGG | m7b | (m7b->m6c) | -0.114 | -0.019 |
0.09 |
|
hsa-miR-4516 |
caattacaTTCTCCCaaca |
0 | GGGAGAAG | m7a | Created | 0.011 | 0.011 | No effect | |
hsa-miR-4728-5p |
caattacatCCTCCCAaca |
0 | UGGGAGGG | m7a | (m7a->m6b) | -0.191 | -0.171 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.37982929C>T | COSN8489159 | 1287_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3065-5p |
tgcccccTTTGTTGgcatc |
0 | UCAACAAA | m7b | Created | -0.050000 | 0.188000 | No effect | |
hsa-miR-3179 |
tgcCCCCTTCgttggcatc |
0 | AGAAGGGG | m7b | (m7b->m6b) | -0.128000 | -0.168000 |
0.830000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.37984111G>C | COSN1276606 | HCC39T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-198 |
tgctgtgCTGGACagttgg |
1 |
GGUCCAGA | m6b | Disrupted | -0.292000 | -0.181000 | No effect |
hsa-miR-4530 |
tgctgTGCTGGacagttgg |
3 |
CCCAGCAG | m6b | Disrupted | -0.520000 | -0.429000 | No effect |
hsa-miR-198 |
tgctgtgCTGGACagttgg |
1 |
GGUCCAGA | m6b | Disrupted | -0.292000 | -0.181000 | No effect |
hsa-miR-4530 |
tgctgTGCTGGacagttgg |
3 |
CCCAGCAG | m6b | Disrupted | -0.520000 | -0.429000 | No effect |
hsa-miR-198 |
tgctgtgCTGGACagttgg |
1 |
GGUCCAGA | m6b | Disrupted | -0.292000 | -0.181000 | No effect |
hsa-miR-4530 |
tgctgTGCTGGacagttgg |
3 |
CCCAGCAG | m6b | Disrupted | -0.520000 | -0.429000 | No effect |
hsa-miR-198 |
tgctgtgCTGGACagttgg |
5 |
GGUCCAGA | m6b | Disrupted | -0.292 | -0.181 | No effect |
hsa-miR-4530 |
tgctgTGCTGGacagttgg |
5 |
CCCAGCAG | m6b | Disrupted | -0.52 | -0.429 | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
37982929 | rs11709029 | C | C |
hsa-miR-3179 |
2 |
CCCCTTCgttggc |
Disrupted |
N |
0.04 |
T |
hsa-miR-3065-5p |
2 |
ccccTTTGTTGgc |
Created |
N |
0.238 |
|||
37983522 | rs1064192 | C | C |
hsa-miR-1275 hsa-miR-4665-5p hsa-miR-503-3p hsa-miR-6751-5p hsa-miR-6752-5p hsa-miR-6803-5p hsa-miR-6835-5p hsa-miR-6842-5p hsa-miR-7109-5p hsa-miR-7110-5p |
2 2 2 2 2 2 2 2 2 2 |
aaataCCCCCAAc aaataCCCCCAAc aAATACCCccaac aaatACCCCCAAc aaatACCCCCAac aaatACCCCCAAc aaaTACCCCCAac aaatACCCCCAac aaataCCCCCAAc aaatACCCCCAac |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N N |
-0.119 -0.119 -0.062 -0.343 -0.134 -0.29 -0.336 -0.137 -0.12 -0.134 |
G |
hsa-miR-1228-5p hsa-miR-1268a hsa-miR-1268b hsa-miR-3147 hsa-miR-585-3p |
2 2 2 3 2 |
aaataCGCCCAAc aaatACGCCCAac aaatACGCCCAac aaatacGCCCAAC aaaTACGCCCAac |
Created Created Created Created Created |
N N N N N |
-0.182 -0.188 -0.188 -0.149 -0.415 |
|||
37984244 | rs184292727 | C | C |
hsa-miR-1343-3p hsa-miR-30c-1-3p hsa-miR-30c-2-3p hsa-miR-3192-5p hsa-miR-6731-5p hsa-miR-6742-3p hsa-miR-6783-3p hsa-miR-6788-5p hsa-miR-6852-5p hsa-miR-6878-5p hsa-miR-8085 hsa-miR-939-3p |
13 11 11 12 11 13 13 11 13 11 11 13 |
attctCCCAGGAg atTCTCCCAggag atTCTCCCAggag attCTCCCAGgag atTCTCCCAggag attctCCCAGGAg attctCCCAGGAg atTCTCCCAggag attctCCCAGGAg aTTCTCCCAggag atTCTCCCAggag attctCCCAGGAg |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N N N N |
-0.188 -0.149 -0.149 -0.197 -0.107 -0.124 -0.17 -0.168 -0.127 -0.29 -0.107 -0.119 |
T |
hsa-miR-1200 hsa-miR-3123 hsa-miR-4324 hsa-miR-544b hsa-miR-6761-5p |
13 8 13 13 12 |
attctCTCAGGAg ATTCTCTcaggag attcTCTCAGGAg attctCTCAGGAg attCTCTCAGgag |
Created Created Created Created Created |
N N N N N |
-0.153 -0.013 -0.296 -0.089 -0.166 |
|||
37984275 | rs190465310 | C | C |
hsa-miR-1275 hsa-miR-149-3p hsa-miR-4447 hsa-miR-4472 hsa-miR-4525 hsa-miR-4665-5p hsa-miR-4723-5p hsa-miR-4728-5p hsa-miR-5010-5p hsa-miR-5698 hsa-miR-625-5p hsa-miR-6785-5p hsa-miR-6804-5p hsa-miR-6825-5p hsa-miR-6870-5p hsa-miR-6883-5p hsa-miR-7111-5p |
2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 |
cacccTCCCCCAc caCCCTCCCccac caccctCCCCCAC caccctCCCCCAC cacccTCCCCCAc cacccTCCCCCAc caccCTCCCCCAc caCCCTCCCccac cacccTCCCCCAc caccCTCCCCCAc cacccTCCCCCAc caCCCTCCCccac CACCCTCccccac cacCCTCCCCcac caccCTCCCCCAc caCCCTCCCccac caccCTCCCCCAc |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N N N N N N N N N |
-0.13 -0.161 -0.188 -0.188 -0.14 -0.112 -0.328 -0.171 -0.137 -0.359 -0.13 -0.152 -0.169 -0.178 -0.338 -0.161 -0.349 |
T |
hsa-miR-2110 hsa-miR-3202 hsa-miR-4271 hsa-miR-4725-3p hsa-miR-4747-5p hsa-miR-491-5p hsa-miR-5196-5p hsa-miR-6780b-5p |
2 2 2 2 2 2 2 2 |
cacccTTCCCCAc caCCCTTCCccac caccCTTCCCCAc caccCTTCCCCAc cacCCTTCCCcac caccctTCCCCAC cacCCTTCCCcac caccCTTCCCCAc |
Created Created Created Created Created Created Created Created |
N N N N N N N N |
-0.039 -0.131 -0.263 -0.295 -0.112 -0.132 -0.102 -0.253 |