| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_001322 |
|---|---|
| Gene Symbol: | CST2 |
| Description: | Homo sapiens cystatin SA (CST2), mRNA. |
| Gene Location: | chr20(-):23804403-23807312 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr20:g.23823822C>T | COSN14471652 | 8057490 | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-1911-3p |
tctcatagcCCTGGTacat |
2 |
CACCAGGC | m6b | Disrupted | -0.162000 | no TS |
11.120000 |
| hsa-miR-4685-5p |
tctcataGCCCTGGtacat |
2 |
CCCAGGGC | m7b | Disrupted | -0.448000 | -0.135000 |
3.440000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr20:g.23823889G>T | COSN5133597 | PD4115a | [breast][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-1184 |
acagagaagGCTGCAGGag |
3 |
CCUGCAGC | m8a | (m8a->m7a) | -0.149000 | no TS |
-1.460000 |
| hsa-miR-3158-5p |
acagagaagTCTGCAGGag |
0 | CCUGCAGA | m8a | (m7a->m8a) | no TS | -0.117000 |
-1.820000 |
| hsa-miR-3166 |
acagagaaGTCTGCaggag |
0 | CGCAGACA | m6b | Created | no TS | -0.124000 |
-2.830000 |
| hsa-miR-3614-3p |
acagaGAAGGCTgcaggag |
0 | UAGCCUUC | m7b | Disrupted | -0.187000 | no TS |
-0.850000 |
| hsa-miR-4771 |
acagagaAGTCTGCaggag |
0 | AGCAGACU | m7b | Created | no TS | -0.353000 |
-4.070000 |
| hsa-miR-499b-5p |
acagagAAGTCTGcaggag |
0 | ACAGACUU | m7b | Created | no TS | -0.089000 |
-2.450000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr20:g.23823936C>T | COSN8610609 | 227_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4457 |
gcccccaCCTTGTGggagg |
0 | UCACAAGG | m7b | Created | no TS | -0.074000 |
-3.810000 |
| hsa-miR-4761-5p |
gccccCACCTTGTgggagg |
0 | ACAAGGUG | m8a | Created | no TS | -0.075000 |
0.170000 |
| hsa-miR-624-3p |
gcccccACCTTGTGggagg |
2 |
CACAAGGU | m8a | Created | -0.076000 | -0.084000 |
0.120000 |
| hsa-miR-92a-2-5p |
gcCCCCACCCtgtgggagg |
1 |
GGGUGGGG | m8a | (m8a->m7b) | -0.366000 | -0.393000 |
0.070000 |