SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_018371
Gene Symbol: CSGALNACT1
Description: Homo sapiens chondroitin sulfate N-acetylgalactosaminyltransferase 1 (CSGALNACT1), transcript variant 1, mRNA.
Gene Location: chr8(-):19261671-19540094
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr8:g.19404210G>T COSN8576018 tumor_4108101 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5197-5p acagGCCATTaatggaagg
 0 CAAUGGCA m6b Created no TS -0.153000 0.900000
hsa-miR-885-5p acaggccatTAATGGAagg
 0 UCCAUUAC m7a (m6a->m7a) no TS -0.102000 -0.110000

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19404590T>A COSN2268883 RK015_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1246 atcAATCCATctgccagaa
 3
 AAUGGAUU m7b (m7b->m6c) -0.073000 no TS 0.210000
hsa-miR-3134 atcaATCCATCtgccagaa
 4
 UGAUGGAU m7b Disrupted -0.159000 no TS 3.610000
hsa-miR-34c-5p atcaatccaACTGCCagaa
 0 AGGCAGUG m6b Created no TS -0.125000 -1.300000
hsa-miR-449b-5p atcaatccaACTGCCagaa
 0 AGGCAGUG m6b Created no TS -0.131000 -2.530000
hsa-miR-5004-3p atcAATCCAActgccagaa
 0 CUUGGAUU m7b (m6c->m7b) no TS -0.062000 -0.020000
hsa-miR-548au-3p atcaatccAACTGCCAgaa
 0 UGGCAGUU m8a Created no TS -0.309000 -0.050000
hsa-miR-1246 atcAATCCATctgccagaa
 3
 AAUGGAUU m7b (m7b->m6c) -0.073000 no TS 0.210000
hsa-miR-3134 atcaATCCATCtgccagaa
 4
 UGAUGGAU m7b Disrupted -0.159000 no TS 3.610000
hsa-miR-34c-5p atcaatccaACTGCCagaa
 0 AGGCAGUG m6b Created no TS -0.125000 -1.300000
hsa-miR-449b-5p atcaatccaACTGCCagaa
 0 AGGCAGUG m6b Created no TS -0.131000 -2.530000
hsa-miR-5004-3p atcAATCCAActgccagaa
 0 CUUGGAUU m7b (m6c->m7b) no TS -0.062000 -0.020000
hsa-miR-548au-3p atcaatccAACTGCCAgaa
 0 UGGCAGUU m8a Created no TS -0.309000 -0.050000
hsa-miR-1246 atcAATCCATctgccagaa
 0 AAUGGAUU m7b (m7b->m6c) -0.073 no TS 0.21
hsa-miR-3134 atcaATCCATCtgccagaa
 0 UGAUGGAU m7b Disrupted -0.159 no TS 3.61
hsa-miR-34c-5p atcaatccaACTGCCagaa
 0 AGGCAGUG m6b Created no TS -0.125 -1.3
hsa-miR-449b-5p atcaatccaACTGCCagaa
 0 AGGCAGUG m6b Created no TS -0.131 -2.53
hsa-miR-5004-3p atcAATCCAActgccagaa
 0 CUUGGAUU m7b (m6c->m7b) no TS -0.062 -0.02
hsa-miR-548au-3p atcaatccAACTGCCAgaa
 0 UGGCAGUU m8a Created no TS -0.309 -0.05

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19404607T>A COSN6518286 HX35T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1277-5p tatATATATTgtgaaagat
 2
 AAAUAUAU m7b (m7b->m6c) -0.105000 no TS -0.480000
hsa-miR-338-5p tatatATATTGTgaaagat
 0 AACAAUAU m7b Disrupted -0.067000 no TS No effect
hsa-miR-5011-5p taTATATATAgtgaaagat
 2
 UAUAUAUA m8a (m7b->m8a) -0.285000 -0.290000 0.240000
hsa-miR-513b tatatataTTGTGAAagat
 2
 UUCACAAG m7a Disrupted -0.253000 -0.181000 0.030000

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19404905A>C COSN1362315 HX10T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4742-3p ctAATACAGAcgtacagat
 7
 UCUGUAUU m8a (m8a->m7b) -0.273000 -0.219000 0.260000
hsa-miR-4999-5p ctaATACAGCcgtacagat
 0 UGCUGUAU m7b (m6c->m7b) no TS -0.107000 -0.010000
hsa-miR-4742-3p ctAATACAGAcgtacagat
 0 UCUGUAUU m8a (m8a->m7b) -0.273 -0.219 0.26
hsa-miR-4999-5p ctaATACAGCcgtacagat
 0 UGCUGUAU m7b (m6c->m7b) no TS -0.107 -0.01

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19405492C>T COSN524459 TCGA-A8-A083-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-223-5p tgtttacAATACACtgaga
 0 CGUGUAUU m7b Created no TS -0.083000 0.010000
hsa-miR-4302 tgtttacaaCACACTGaga
 0 CCAGUGUG m7b (m7b->m6b) -0.288000 -0.084000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19405744T>G COSN1084577 TCGA-AP-A056-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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