SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000567
Gene Symbol: CRP
Description: Homo sapiens C-reactive protein, pentraxin-related (CRP), mRNA.
Gene Location: chr1(-):159682078-159684379
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr1:g.159712822T>C COSN8965497 SS6003320 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-148a-5p ccaAGAACTTaaatgactg
2
AAAGUUCU m7b (m7b->m6c) -0.158000 no TS 0.160000
hsa-miR-148b-5p ccaAGAACTTaaatgactg
0 AAGUUCUG m7a (m7a->m6b) NA NA No effect
hsa-miR-3168 ccaAGAACTCaaatgactg
1
GAGUUCUA m7a (m6b->m7a) -0.024000 -0.024000 0.030000
hsa-miR-5696 ccaagaactTAAATGActg
1
CUCAUUUA m7b (m7b->m6b) 0.069000 0.079000 0.880000
hsa-miR-579 ccaagaactCAAATGActg
1
UUCAUUUG m7b (m6b->m7b) 0.080000 0.077000 0.080000
hsa-miR-644b-3p ccaagaactCAAATGActg
1
UUCAUUUG m7b (m6b->m7b) 0.086000 0.065000 -0.030000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Genome Browser