SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001079534
Gene Symbol: CPEB1
Description: Homo sapiens cytoplasmic polyadenylation element binding protein 1 (CPEB1), transcript variant 2, mRNA.
Gene Location: chr15(-):83211950-83240573
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.82543705T>C COSN6643092 CHC205T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3182 tggggttgACAGAAGtttt
 0 GCUUCUGU m7b Created no TS -0.049000 No effect
hsa-miR-505-3p tgggGTTGACagaagtttt
 0 CGUCAACA m6b Created no TS -0.050000 No effect
hsa-miR-3182 tggggttgACAGAAGtttt
 0 GCUUCUGU m7b Created no TS -0.049000 No effect
hsa-miR-505-3p tgggGTTGACagaagtttt
 0 CGUCAACA m6b Created no TS -0.050000 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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