SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_001079533
Gene Symbol:	CPEB1
Description:	Homo sapiens cytoplasmic polyadenylation element binding protein 1 (CPEB1), transcript variant 2, mRNA.
Gene Location:	chr15(-):83211950-83240573
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Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr15:g.82543705T>C			COSN6643092		CHC205T		[liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-3182	tggggttgACAGAAGtttt	0	GCUUCUGU	m7b	Created	no TS	-0.049000	No effect
hsa-miR-505-3p	tgggGTTGACagaagtttt	0	CGUCAACA	m6b	Created	no TS	-0.050000	No effect
hsa-miR-3182	tggggttgACAGAAGtttt	0	GCUUCUGU	m7b	Created	no TS	-0.049000	No effect
hsa-miR-505-3p	tgggGTTGACagaagtttt	0	CGUCAACA	m6b	Created	no TS	-0.050000	No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Germline mutations in target sites of miRNAs in somatic mutation table

Location	SNP ID	Ancestral Allele	Allele	miR ID	Conservation	miRSite	FuncClass	Validation	context+ score change
82543705	rs201640691	T
			C	hsa-miR-215-3p hsa-miR-3182 hsa-miR-4743-3p hsa-miR-505-3p hsa-miR-6773-3p hsa-miR-6888-3p	17 14 15 14 17 15	ggtTGACAGAagt ggttgACAGAAGt ggttGACAGAAgt gGTTGACAgaagt ggtTGACAGAagt ggttGACAGAAgt	Created Created Created Created Created Created	N N N N N N	-0.051 -0.049 -0.083 -0.05 -0.056 -0.059

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