SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_014461
Gene Symbol: CNTN6
Description: Homo sapiens contactin 6 (CNTN6), mRNA.
Gene Location: chr3(+):1134628-1445278
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.1403447T>G COSN166801 GC7_T [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3613-3p ttgagagTTTTTTGaaagc
 6
 ACAAAAAA m7b Disrupted -0.039000 no TS 1.650000
hsa-miR-548ae ttgagAGTTTTTtgaaagc
 0 CAAAAACU m7b Disrupted -0.034000 no TS 1.340000
hsa-miR-548ah-3p ttgagAGTTTTTtgaaagc
 0 CAAAAACU m7b Disrupted -0.034000 no TS 1.040000
hsa-miR-548aj-3p ttgagAGTTTTTtgaaagc
 0 UAAAAACU m7b Disrupted -0.043000 no TS 1.240000
hsa-miR-548am-3p ttgagAGTTTTTtgaaagc
 0 CAAAAACU m7b Disrupted -0.034000 no TS 1.440000
hsa-miR-548aq-3p ttgagAGTTTTTtgaaagc
 0 CAAAAACU m7b Disrupted -0.034000 no TS 1.340000
hsa-miR-548x-3p ttgagAGTTTTTtgaaagc
 0 UAAAAACU m7b Disrupted -0.034000 no TS 1.240000
hsa-miR-3613-3p ttgagagTTTTTTGaaagc
 6
 ACAAAAAA m7b Disrupted -0.039 no TS 1.65
hsa-miR-548ae ttgagAGTTTTTtgaaagc
 0 CAAAAACU m7b Disrupted -0.034 no TS 1.34
hsa-miR-548ah-3p ttgagAGTTTTTtgaaagc
 0 CAAAAACU m7b Disrupted -0.034 no TS 1.04
hsa-miR-548aj-3p ttgagAGTTTTTtgaaagc
 0 UAAAAACU m7b Disrupted -0.043 no TS 1.24
hsa-miR-548am-3p ttgagAGTTTTTtgaaagc
 0 CAAAAACU m7b Disrupted -0.034 no TS 1.44
hsa-miR-548aq-3p ttgagAGTTTTTtgaaagc
 0 CAAAAACU m7b Disrupted -0.034 no TS 1.34
hsa-miR-548x-3p ttgagAGTTTTTtgaaagc
 0 UAAAAACU m7b Disrupted -0.034 no TS 1.24

Mutation Mutation ID Sample Name Cancer Type
chr3:g.1403479T>C COSN14455707 8066037 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3135b tatatgctCTCCAGCCtct
 7
 GGCUGGAG m8a Disrupted -0.240000 no TS 10.560000
hsa-miR-3150a-3p tatatgCTCCCCAGcctct
 0 CUGGGGAG m8a Created no TS -0.204000 -3.290000
hsa-miR-3175 tatatgCTCCCCagcctct
 0 CGGGGAGA m6b Created no TS -0.201000 -10.740000
hsa-miR-3652 tatatgctcTCCAGCCtct
 8
 CGGCUGGA m7b (m7b->m6c) -0.209000 no TS 4.500000
hsa-miR-4430 tatatgctcTCCAGCCTct
 8
 AGGCUGGA m8a (m8a->m7b) -0.237000 no TS 4.500000
hsa-miR-4505 tatatgctcCCCAGCCTct
 0 AGGCUGGG m8a (m7b->m8a) no TS -0.225000 -1.310000
hsa-miR-4667-5p tatatgcTCCCCAGcctct
 0 ACUGGGGA m7b Created no TS -0.195000 -3.290000
hsa-miR-4700-5p tatatgcTCCCCAGcctct
 0 UCUGGGGA m7b Created no TS -0.214000 -3.290000
hsa-miR-4731-5p tatatgctCCCCAGCctct
 0 UGCUGGGG m7b Created no TS -0.289000 -3.300000
hsa-miR-5192 tatatgCTCTCCagcctct
 0 AGGAGAGU m6b Disrupted -0.169000 no TS 10.950000
hsa-miR-920 tatatGCTCCCCagcctct
 0 GGGGAGCU m7a Created NA NA -9.960000
hsa-miR-939 tatatGCTCCCCAgcctct
 0 UGGGGAGC m8a Created no TS -0.518000 -3.290000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.1403493C>T COSN6734043 RK216_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-581 cctctgACACAAGAtgcgt
 0 UCUUGUGU m8a Disrupted -0.283000 no TS 2.470000
hsa-miR-592 cctcTGACACAAgatgcgt
 0 UUGUGUCA m8a Disrupted -0.308000 no TS 2.470000
hsa-miR-597 cctcTGACACAagatgcgt
 0 UGUGUCAC m7a Disrupted -0.140000 no TS 1.720000
hsa-miR-599 cctctGACACAAgatgcgt
 0 GUUGUGUC m7b Disrupted -0.140000 no TS 2.470000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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